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Multichannel measurements of C. elegans largest Lyapunov exponents using optical diffraction

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Abstract

Dynamic diffraction (DOD) is a form of microscopy that allows the dynamic tracking of changing shapes in a 1D time series. DOD can capture the locomotion of a nematode while swimming freely in a 3D space, allowing the locomotion of the worm to more closely mimic natural behavior than in some other laboratory environments. More importantly, we are able to see markers of chaos as DOD covers dynamics on multiple length scales. This work introduces a multichannel method to measure the dynamic complexity of microscopic organisms. We show that parameters associated with chaos, such as the largest Lyapunov exponent (LLE), the mean frequency, mutual information (MI), and the embedding dimension, are independent of the specific point sampled in the diffraction pattern, thus demonstrating experimentally the consistency of our dynamic parameters sampled at various locations (channels) in the associated optical far-field pattern.

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Supplementary Material (5)

NameDescription
Code 1       Code sequence to calculate largest Lyapunov exponents. Fig. 7
Dataset 1       Data extracted from videos 1, 2, and 3.
Visualization 1       Diffraction Video 1 of worms associated with Figure 8.
Visualization 2       Diffraction Video 2 of worms associated with Figure 8.
Visualization 3       Diffraction Video 3 of worms associated with Figure 8.

Data availability

Data underlying the results presented in this paper and the relevant analysis routines are available in Dataset 1, Ref. [38].

38. R. F. Zanetti, K. L. Canavan, S. G. Zhang, and J. Magnes, “Multi-channel measurements of C. elegans largest Lyapunov exponents using optical diffraction,” figshare, 2023, https://doi.org/10.6084/m9.figshare.23694870.

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Figures (8)

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Equations (3)

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