Geometrical-optics approach to measure the optical density of bacterial cultures using a LED-based photometer

Massimiliano Lucidi, Marco Marsan, Francesco Pudda, Mattia Pirolo, Emanuela Frangipani, Paolo Visca, and Gabriella Cincotti

Biomed. Opt. Express 10(11), 5600-5610 (2019)  View: HTML | PDF

Single pixel hyperspectral bioluminescence tomography based on compressive sensing

Alexander Bentley, Jonathan E. Rowe, and Hamid Dehghani

Biomed. Opt. Express 10(11), 5549-5564 (2019)  View: HTML | PDF

System configuration optimization for mesoscopic fluorescence molecular tomography

Fugang Yang, Denzel Faulkner, Ruoyang Yao, Mehmet S. Ozturk, Qinglan Qu, and Xavier Intes

Biomed. Opt. Express 10(11), 5660-5674 (2019)  View: HTML | PDF

Brain segmentation, spatial censoring, and averaging techniques for optical functional connectivity imaging in mice

Brian R. White, Jonah A. Padawer-Curry, Akiva S. Cohen, Daniel J. Licht, and Arjun G. Yodh

Biomed. Opt. Express 10(11), 5952-5973 (2019)  View: HTML | PDF

Nonparametric empirical Bayesian framework for fluorescence-lifetime imaging microscopy

Shulei Wang, Jenu V. Chacko, Abdul K. Sagar, Kevin W. Eliceiri, and Ming Yuan

Biomed. Opt. Express 10(11), 5497-5517 (2019)  View: HTML | PDF

Polarized reflectance from articular cartilage depends upon superficial zone collagen network microstructure

R. N. Huynh, B. Pesante, G. Nehmetallah, and C. B. Raub

Biomed. Opt. Express 10(11), 5518-5534 (2019)  View: HTML | PDF

Dual-plane 3-photon microscopy with remote focusing

Kevin T. Takasaki, Dmitri Tsyboulski, and Jack Waters

Biomed. Opt. Express 10(11), 5585-5599 (2019)  View: HTML | PDF

Multi-plane remote refocusing epifluorescence microscopy to image dynamic Ca²⁺ events

Penelope F. Lawton, Charlotte Buckley, Chris D. Saunter, Calum Wilson, Alexander D. Corbett, Patrick S. Salter, John G. McCarron, and John M. Girkin

Biomed. Opt. Express 10(11), 5611-5624 (2019)  View: HTML | PDF  [Suppl. Mat. (2)]

Spatially modulated illumination allows for light sheet fluorescence microscopy with an incoherent source and compressive sensing

Gianmaria Calisesi, Michele Castriotta, Alessia Candeo, Anna Pistocchi, Cosimo D’Andrea, Gianluca Valentini, Andrea Farina, and Andrea Bassi

Biomed. Opt. Express 10(11), 5776-5788 (2019)  View: HTML | PDF  [Suppl. Mat. (2)]

Label-free dynamic imaging of mitochondria and lysosomes within living cells via simultaneous dual-pump photothermal microscopy

Jun Miyazaki and Yasunobu Toumon

Biomed. Opt. Express 10(11), 5852-5861 (2019)  View: HTML | PDF  [Suppl. Mat. (4)]

Imaging hair cells through laser-ablated cochlear bone

Marilisa Romito, Ye Pu, Konstantina M. Stankovic, and Demetri Psaltis

Biomed. Opt. Express 10(11), 5974-5988 (2019)  View: HTML | PDF

Near-infrared tunable diode laser absorption spectroscopy-based determination of carbon dioxide in human exhaled breath

Cunguang Lou, Congrui Jing, Xin Wang, Yuhao Chen, Jiantao Zhang, Kaixuan Hou, Jianquan Yao, and Xiuling Liu

Biomed. Opt. Express 10(11), 5486-5496 (2019)  View: HTML | PDF

Study on melanin enhanced third harmonic generation in a live cell model

Chi-Kuang Sun, Wei-Min Liu, and Yi-Hua Liao

Biomed. Opt. Express 10(11), 5716-5723 (2019)  View: HTML | PDF

Compact system for in situ laser Doppler velocimetry of blood flow

Elise Bou, Aliou Ly, Julien Roul, Olivier Llopis, Christophe Vieu, and Aline Cerf

Biomed. Opt. Express 10(11), 5862-5876 (2019)  View: HTML | PDF

Non-invasive human vital signs monitoring based on twin-core optical fiber sensors

Fengze Tan, Shuyang Chen, Weimin Lyu, Zhengyong Liu, Changyuan Yu, Chao Lu, and Hwa-Yaw Tam

Biomed. Opt. Express 10(11), 5940-5952 (2019)  View: HTML | PDF

Optical coherence tomography velocimetry based on decorrelation estimation of phasor pair ratios (DEPPAIR)

Maximilian G. O. Gräfe, Oleg Nadiarnykh, and Johannes F. De Boer

Biomed. Opt. Express 10(11), 5470-5485 (2019)  View: HTML | PDF  [Suppl. Mat. (1)]

Retina phantom for the evaluation of optical coherence tomography angiography based on microfluidic channels

Hyun-Ji Lee, Nafra M. Samiudin, Tae Geol Lee, Il Doh, and Sang-Won Lee

Biomed. Opt. Express 10(11), 5535-5548 (2019)  View: HTML | PDF  [Suppl. Mat. (1)]

Characterization of oviduct ciliary beat frequency using real time phase resolved Doppler spectrally encoded interferometric microscopy

Youmin He, Yueqiao Qu, Joseph C. Jing, and Zhongping Chen

Biomed. Opt. Express 10(11), 5650-5659 (2019)  View: HTML | PDF  [Suppl. Mat. (1)]

In vivo corneal endothelium imaging using ultrahigh resolution OCT

Xinwen Yao, Kavya Devarajan, René M. Werkmeister, Valentin Aranha dos Santos, Marcus Ang, Anthony Kuo, Damon W. K. Wong, Jacqueline Chua, Bingyao Tan, Veluchamy Amutha Barathi, and Leopold Schmetterer

Biomed. Opt. Express 10(11), 5675-5686 (2019)  View: HTML | PDF

Ultrahigh-resolution optical coherence tomography/angiography with an economic and compact supercontinuum laser

Tai-Ang Wang, Ming-Che Chan, Hsiang-Chieh Lee, Cheng-Yu Lee, and Meng-Tsan Tsai

Biomed. Opt. Express 10(11), 5687-5702 (2019)  View: HTML | PDF

Clinical multi-functional OCT for retinal imaging

Shinnosuke Azuma, Shuichi Makita, Deepa Kasaragod, Satoshi Sugiyama, Masahiro Miura, and Yoshiaki Yasuno

Biomed. Opt. Express 10(11), 5724-5743 (2019)  View: HTML | PDF

Signal averaging improves signal-to-noise in OCT images: But which approach works best, and when?

Bernhard Baumann, Conrad W. Merkle, Rainer A. Leitgeb, Marco Augustin, Andreas Wartak, Michael Pircher, and Christoph K. Hitzenberger

Biomed. Opt. Express 10(11), 5755-5775 (2019)  View: HTML | PDF

Two dimensional non-scanning transform-free spatial-domain optical coherence tomography

Yu-Kai Lin, Chun-Wei Chang, and I-Jen Hsu

Biomed. Opt. Express 10(11), 5789-5800 (2019)  View: HTML | PDF

Deep learning based noise reduction method for automatic 3D segmentation of the anterior of lamina cribrosa in optical coherence tomography volumetric scans

Zaixing Mao, Atsuya Miki, Song Mei, Ying Dong, Kazuichi Maruyama, Ryo Kawasaki, Shinichi Usui, Kenji Matsushita, Kohji Nishida, and Kinpui Chan

Biomed. Opt. Express 10(11), 5832-5851 (2019)  View: HTML | PDF

Spatial localization of mechanical excitation affects spatial resolution, contrast, and contrast-to-noise ratio in acoustic radiation force optical coherence elastography

Nichaluk Leartprapun, Rishyashring R. Iyer, Colin D. Mackey, and Steven G. Adie

Biomed. Opt. Express 10(11), 5877-5904 (2019)  View: HTML | PDF

Optical coherence tomography for in vivo imaging of endocardial to mesenchymal transition during avian heart development

Katherine Courchaine and Sandra Rugonyi

Biomed. Opt. Express 10(11), 5989-5995 (2019)  View: HTML | PDF

Proper measurement of pure dielectrophoresis force acting on a RBC using optical tweezers

Mehrzad Sasanpour, Ali Azadbakht, Parisa Mollaei, and S. Nader S. Reihani

Biomed. Opt. Express 10(11), 5639-5649 (2019)  View: HTML | PDF  [Suppl. Mat. (7)]

Chromophore selective multi-wavelength photoacoustic remote sensing of unstained human tissues

Saad Abbasi, Martin Le, Bazil Sonier, Kevan Bell, Deepak Dinakaran, Gilbert Bigras, John R. Mackey, and Parsin Haji Reza

Biomed. Opt. Express 10(11), 5461-5469 (2019)  View: HTML | PDF

Characterization and modeling of acousto-optic signal strengths in highly scattering media

Alexander Bengtsson, David Hill, Meng Li, Mengqiao Di, Magnus Cinthio, Tobias Erlöv, Stefan Andersson-Engels, Nina Reistad, Andreas Walther, Lars Rippe, and Stefan Kröll

Biomed. Opt. Express 10(11), 5565-5584 (2019)  View: HTML | PDF

Photoacoustic imaging of living mice enhanced with a low-cost contrast agent

Shuangyang Zhang, Li Qi, Xipan Li, Jiaming Liu, Shixian Huang, Jian Wu, Ruiyuan Liu, Yanqiu Feng, Qianjin Feng, and Wufan Chen

Biomed. Opt. Express 10(11), 5744-5754 (2019)  View: HTML | PDF  [Suppl. Mat. (3)]

Semi-anthropomorphic photoacoustic breast phantom

Maura Dantuma, Rianne van Dommelen, and Srirang Manohar

Biomed. Opt. Express 10(11), 5921-5939 (2019)  View: HTML | PDF  [Suppl. Mat. (7)]

Analysis of skin morphological features and real-time monitoring using snapshot hyperspectral imaging

Qinghua He and Ruikang K. Wang

Biomed. Opt. Express 10(11), 5625-5638 (2019)  View: HTML | PDF

Methods of extraction of optical properties from diffuse reflectance measurements of ex-vivo human colon tissue using thin film silicon photodetector arrays

Ben LaRiviere, N. Lynn Ferguson, Katherine S. Garman, Deborah A. Fisher, and Nan M. Jokerst

Biomed. Opt. Express 10(11), 5703-5715 (2019)  View: HTML | PDF

Diffuse reflectance spectroscopy accurately identifies the pre-cortical zone to avoid impending pedicle screw breach in spinal fixation surgery

Gustav Burström, Akash Swamy, Jarich W. Spliethoff, Christian Reich, Drazenko Babic, Benno H. W. Hendriks, Halldor Skulason, Oscar Persson, Adrian Elmi Terander, and Erik Edström

Biomed. Opt. Express 10(11), 5905-5920 (2019)  View: HTML | PDF

Pre-operative simulation of post-operative multifocal vision

Maria Vinas, Sara Aissati, Mercedes Romero, Clara Benedi-Garcia, Nuria Garzon, Francisco Poyales, Carlos Dorronsoro, and Susana Marcos

Biomed. Opt. Express 10(11), 5801-5817 (2019)  View: HTML | PDF

Image quality eigenfunctions for the human eye

Pablo Rodríguez, Rafael Navarro, and Jos J. Rozema

Biomed. Opt. Express 10(11), 5818-5831 (2019)  View: HTML | PDF

Simplified approach to least-square fitting of fluorescence lifetime ophthalmoscopy (FLIO) data by fixating lifetimes

Rowena Schultz, Franziska Schuster, Thomas Lehmann, Johanna Schmidt, Regine Augsten, and Martin Hammer

Biomed. Opt. Express 10(11), 5996-6008 (2019)  View: HTML | PDF

Imaging relative stasis of the blood column in human retinal capillaries

Phillip Bedggood and Andrew Metha

Biomed. Opt. Express 10(11), 6009-6028 (2019)  View: HTML | PDF  [Suppl. Mat. (10)]