Mechanical and hemodynamic responses of breast tissue under mammographic-like compression during functional dynamic optical imaging

Rabah M. Al abdi, Bin Deng, Heba H. Hijazi, Melissa Wu, and Stefan A. Carp

Biomed. Opt. Express 11(10), 5425-5441 (2020)  View: HTML | PDF

Spatial frequency domain imaging for the longitudinal monitoring of vascularization during mouse femoral graft healing

Jingxuan Ren, Gabriel A. Ramirez, Ashley R. Proctor, Tong Tong Wu, Danielle S. W. Benoit, and Regine Choe

Biomed. Opt. Express 11(10), 5442-5455 (2020)  View: HTML | PDF

Dynamic time domain near-infrared optical tomography based on a SPAD camera

Jingjing Jiang, Aldo Di Costanzo Mata, Scott Lindner, Edoardo Charbon, Martin Wolf, and Alexander Kalyanov

Biomed. Opt. Express 11(10), 5470-5477 (2020)  View: HTML | PDF

Depth-resolved Mueller matrix polarimetry microscopy of the rat cornea

V. N. Du Le, Ilyas Saytashev, Sudipta Saha, Pedro F. Lopez, Megan Laughrey, and Jessica C. Ramella-Roman

Biomed. Opt. Express 11(10), 5982-5994 (2020)  View: HTML | PDF

Fast in vivo multiphoton light-sheet microscopy with optimal pulse frequency

Vincent Maioli, Antoine Boniface, Pierre Mahou, Júlia Ferrer Ortas, Lamiae Abdeladim, Emmanuel Beaurepaire, and Willy Supatto

Biomed. Opt. Express 11(10), 6012-6026 (2020)  View: HTML | PDF  [Suppl. Mat. (6)]

Au nanostar nanoparticle as a bio-imaging agent and its detection and visualization in biosystems

E. Perevedentseva, N. Ali, Y.-C. Lin, A. Karmenyan, C.-C. Chang, O. Bibikova, I. Skovorodkin, R. Prunskaite-Hyyryläinen, S. J. Vainio, M. Kinnunen, and C.-L. Cheng

Biomed. Opt. Express 11(10), 5872-5885 (2020)  View: HTML | PDF

Analysis of retinal nerve fiber layer birefringence in patients with glaucoma and diabetic retinopathy by polarization sensitive OCT

Sylvia Desissaire, Andreas Pollreisz, Aleksandra Sedova, Dorottya Hajdu, Felix Datlinger, Stefan Steiner, Clemens Vass, Florian Schwarzhans, Georg Fischer, Michael Pircher, Ursula Schmidt-Erfurth, and Christoph K. Hitzenberger

Biomed. Opt. Express 11(10), 5488-5505 (2020)  View: HTML | PDF

Three-dimensional collagen fiber mapping and tractography of human uterine tissue using OCT

James P. McLean, Shuyang Fang, George Gallos, Kristin M. Myers, and Christine P. Hendon

Biomed. Opt. Express 11(10), 5518-5541 (2020)  View: HTML | PDF  [Suppl. Mat. (8)]

Role of pH level on the morphology and growth rate of myelin figures

Marzieh Allah Panahi, Zahra Tahmasebi, Vahid Abbasian, Mohammad Amiri, and Ali-Reza Moradi

Biomed. Opt. Express 11(10), 5565-5574 (2020)  View: HTML | PDF

Transcranial photobiomodulation-induced changes in human brain functional connectivity and network metrics mapped by whole-head functional near-infrared spectroscopy in vivo

Elizabeth L. Urquhart, Hashini Wanniarachchi, Xinlong Wang, Francisco Gonzalez-Lima, George Alexandrakis, and Hanli Liu

Biomed. Opt. Express 11(10), 5783-5799 (2020)  View: HTML | PDF

Quantitative diffuse optical spectroscopy for noninvasive measurements of the malaria pigment hemozoin

Chris Campbell and Thomas D. O’Sullivan

Biomed. Opt. Express 11(10), 5800-5813 (2020)  View: HTML | PDF

Effect of vascular structure on laser speckle contrast imaging

Chakameh Z. Jafari, Colin T. Sullender, David R. Miller, Samuel A. Mihelic, and Andrew K. Dunn

Biomed. Opt. Express 11(10), 5826-5841 (2020)  View: HTML | PDF

Moxifloxacin based fluorescence imaging of intestinal goblet cells

Seunghun Lee, Seonghan Kim, Kwangwoo Nam, Sun Young Kim, Seungrag Lee, Seung-Jae Myung, and Ki Hean Kim

Biomed. Opt. Express 11(10), 5814-5825 (2020)  View: HTML | PDF  [Suppl. Mat. (3)]

Holo-UNet: hologram-to-hologram neural network restoration for high fidelity low light quantitative phase imaging of live cells

Zhiduo Zhang, Yujie Zheng, Tienan Xu, Avinash Upadhya, Yean Jin Lim, Alexander Mathews, Lexing Xie, and Woei Ming Lee

Biomed. Opt. Express 11(10), 5478-5487 (2020)  View: HTML | PDF

Lissajous scanning structured illumination microscopy

Hyunwoo Kim, Yeong-Hyeon Seo, Jaehun Jeon, and Ki-Hun Jeong

Biomed. Opt. Express 11(10), 5575-5585 (2020)  View: HTML | PDF

Quantitative third-harmonic generation imaging of mouse visual cortex areas reveals correlations between functional maps and structural substrates

Murat Yildirim, Ming Hu, Nhat M. Le, Hiroki Sugihara, Peter T. C. So, and Mriganka Sur

Biomed. Opt. Express 11(10), 5650-5673 (2020)  View: HTML | PDF  [Suppl. Mat. (5)]

Fluorescence intensity and lifetime redox ratios detect metabolic perturbations in T cells

Linghao Hu, Nianchao Wang, Elizabeth Cardona, and Alex J. Walsh

Biomed. Opt. Express 11(10), 5674-5688 (2020)  View: HTML | PDF

Multiwavelength confocal laser scanning microscopy of the cornea

Sebastian Bohn, Karsten Sperlich, Thomas Stahnke, Melanie Schünemann, Heinrich Stolz, Rudolf F. Guthoff, and Oliver Stachs

Biomed. Opt. Express 11(10), 5689-5700 (2020)  View: HTML | PDF

Unsupervised clustering of multiparametric fluorescent images extends the spectrum of detectable cell membrane phases with sub-micrometric resolution

Giada Bianchetti, Marco De Spirito, and Giuseppe Maulucci

Biomed. Opt. Express 11(10), 5728-5744 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Live-SIMBA: an ImageJ plug-in for the universal and accelerated single molecule-guided Bayesian localization super resolution microscopy (SIMBA) method

Hongjia Li, Fan Xu, Shan Gao, Mingshu Zhang, Fudong Xue, Pingyong Xu, and Fa Zhang

Biomed. Opt. Express 11(10), 5842-5859 (2020)  View: HTML | PDF  [Suppl. Mat. (2)]

Nanometer precise red blood cell sizing using a cost-effective quantitative dark field imaging system

Xiaoya Chen, Peng Luo, Chuanzhen Hu, Shaojie Yan, Dapeng Lu, Yaning Li, Kaiqin Chu, and Zachary J. Smith

Biomed. Opt. Express 11(10), 5950-5966 (2020)  View: HTML | PDF  [Suppl. Mat. (3)]

Ballistocardiography monitoring system based on optical fiber interferometer aided with heartbeat segmentation algorithm

Shuyang Chen, Fengze Tan, Weimin Lyu, and Changyuan Yu

Biomed. Opt. Express 11(10), 5458-5469 (2020)  View: HTML | PDF

On-chip fluorescence sensing for fluidics platforms using thin film silicon photodetectors

Aditi Dighe and Nan Jokerst

Biomed. Opt. Express 11(10), 5772-5782 (2020)  View: HTML | PDF

In vivo SS-OCT imaging of crystalline lens sutures

Ashish Gupta, Daniel Ruminski, Alfonso Jimenez Villar, Raúl Duarte Toledo, Silvestre Manzanera, Spozmai Panezai, Juan Mompean, Pablo Artal, and Ireneusz Grulkowski

Biomed. Opt. Express 11(10), 5388-5400 (2020)  View: HTML | PDF  [Suppl. Mat. (2)]

High-resolution polarization-sensitive optical coherence tomography for zebrafish muscle imaging

Di Yang, Muyun Hu, Muyang Zhang, and Yanmei Liang

Biomed. Opt. Express 11(10), 5618-5632 (2020)  View: HTML | PDF

Bulk-phase-error correction for phase-sensitive signal processing of optical coherence tomography

Kensuke Oikawa, Daisuke Oida, Shuichi Makita, and Yoshiaki Yasuno

Biomed. Opt. Express 11(10), 5886-5902 (2020)  View: HTML | PDF

Full-field spectral-domain optical interferometry for snapshot three-dimensional microscopy

Rishyashring R. Iyer, Mantas Žurauskas, Qi Cui, Liang Gao, R. Theodore Smith, and Stephen A. Boppart

Biomed. Opt. Express 11(10), 5903-5919 (2020)  View: HTML | PDF  [Suppl. Mat. (2)]

Micro-optical coherence tomography for high-resolution morphologic imaging of cellular and nerval corneal micro-structures

Andreas Wartak, Merle S. Schenk, Verena Bühler, Stefan A. Kassumeh, Reginald Birngruber, and Guillermo J. Tearney

Biomed. Opt. Express 11(10), 5920-5933 (2020)  View: HTML | PDF

Kilohertz retinal FF-SS-OCT and flood imaging with hardware-based adaptive optics

Denise Valente, Kari V. Vienola, Robert J. Zawadzki, and Ravi S. Jonnal

Biomed. Opt. Express 11(10), 5995-6011 (2020)  View: HTML | PDF

In-vitro study of monocytic THP-1 leukemia cell membrane elasticity with a single-cell microfluidic-assisted optical trapping system

Ric John L. Ombid, Glenn G. Oyong, Esperanza C. Cabrera, Wilfred V. Espulgar, Masato Saito, Eiichi Tamiya, and Romeric F. Pobre

Biomed. Opt. Express 11(10), 6027-6037 (2020)  View: HTML | PDF

Skull acoustic aberration correction in photoacoustic microscopy using a vector space similarity model: a proof-of-concept simulation study

Leila Mohammadi, Hamid Behnam, Jahan Tavakkoli, and Kamran Avanaki

Biomed. Opt. Express 11(10), 5542-5556 (2020)  View: HTML | PDF

Feasibility of identifying reflection artifacts in photoacoustic imaging using two-wavelength excitation

Ho Nhu Y. Nguyen and Wiendelt Steenbergen

Biomed. Opt. Express 11(10), 5745-5759 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

High compression deep learning based single-pixel hyperspectral macroscopic fluorescence lifetime imaging in vivo

M. Ochoa, A. Rudkouskaya, R. Yao, P. Yan, M. Barroso, and X. Intes

Biomed. Opt. Express 11(10), 5401-5424 (2020)  View: HTML | PDF

Deep learning model for ultrafast quantification of blood flow in diffuse correlation spectroscopy

Chien-Sing Poon, Feixiao Long, and Ulas Sunar

Biomed. Opt. Express 11(10), 5557-5564 (2020)  View: HTML | PDF

Real-time, wide-field and high-quality single snapshot imaging of optical properties with profile correction using deep learning

Enagnon Aguénounon, Jason T. Smith, Mahdi Al-Taher, Michele Diana, Xavier Intes, and Sylvain Gioux

Biomed. Opt. Express 11(10), 5701-5716 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Single wavelength measurements of absorption coefficients based on iso-pathlength point

Idit Feder, Hamootal Duadi, and Dror Fixler

Biomed. Opt. Express 11(10), 5760-5771 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Wearable and wireless time-domain near-infrared spectroscopy system for brain and muscle hemodynamic monitoring

Michele Lacerenza, Mauro Buttafava, Marco Renna, Alberto Dalla Mora, Lorenzo Spinelli, Franco Zappa, Antonio Pifferi, Alessandro Torricelli, Alberto Tosi, and Davide Contini

Biomed. Opt. Express 11(10), 5934-5949 (2020)  View: HTML | PDF

Qualitative disorder measurements from backscattering spectra through an optical fiber

R. Fernández, A. Marcos-Vidal, S. Gallego, A. Beléndez, M. Desco, and J. Ripoll

Biomed. Opt. Express 11(10), 6038-6048 (2020)  View: HTML | PDF

Comparison of algorithms to suppress artifacts from the natural lens in fluorescence lifetime imaging ophthalmoscopy (FLIO)

D. Schweitzer, J. Haueisen, J. L. Brauer, M. Hammer, and M. Klemm

Biomed. Opt. Express 11(10), 5586-5602 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Vision with pulsed infrared light is mediated by nonlinear optical processes

Silvestre Manzanera, Daniel Sola, Noe Khalifa, and Pablo Artal

Biomed. Opt. Express 11(10), 5603-5617 (2020)  View: HTML | PDF

Eigenlenses: a new model for full crystalline lens shape representation and its applications

Eduardo Martinez-Enriquez, Alberto de Castro, and Susana Marcos

Biomed. Opt. Express 11(10), 5633-5649 (2020)  View: HTML | PDF  [Suppl. Mat. (4)]

Standardizing sum-of-segments axial length using refractive index models

David L. Cooke, Timothy L. Cooke, Marwan Suheimat, and David A. Atchison

Biomed. Opt. Express 11(10), 5860-5870 (2020)  View: HTML | PDF

X-ray Zernike phase contrast tomography: 3D ROI visualization of mm-sized mice organ tissues down to sub-cellular components

E. Longo, L. Sancey, S. Flenner, A. Kubec, A. Bonnin, C. David, M. Müller, and I. Greving

Biomed. Opt. Express 11(10), 5506-5517 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Quantitative two-photon microscopy imaging analysis of human skin to evaluate enhanced transdermal delivery by hybrid-type multi-lamellar nanostructure: retraction

Jinhyo Ahn, Kyeong Hu Kim, Kibaek Choe, Joo Hyuck Lim, Seung Ki Lee, Yeon Sook Kim, and Pilhan Kim

Biomed. Opt. Express 11(10), 5871-5871 (2020)  View: HTML | PDF

Defocused imaging exploits supercritical-angle fluorescence emission for precise axial single molecule localization microscopy: erratum

Philipp Zelger, Lisa Bodner, Lukas Velas, Gerhard J. Schütz, and Alexander Jesacher

Biomed. Opt. Express 11(10), 5456-5457 (2020)  View: HTML | PDF