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1 May 2020, Volume 11, Issue 5, pp. 2313-2873  
42 articles

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Editors' Pick

Development of a low-cost imaging system for remote mosquito surveillance

Adam Goodwin, Margaret Glancey, Tristan Ford, Laura Scavo, Jewell Brey, Collyn Heier, Nicholas J. Durr, and Soumyadipta Acharya

Biomed. Opt. Express 11(5), 2560-2569 (2020)  View: HTML | PDF

Compact off-axis holographic slide microscope: design guidelines

Teresa Cacace, Vittorio Bianco, Biagio Mandracchia, Vito Pagliarulo, Emilia Oleandro, Melania Paturzo, and Pietro Ferraro

Biomed. Opt. Express 11(5), 2511-2532 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Robotic microscopy for everyone: the OpenFlexure microscope

Joel T. Collins, Joe Knapper, Julian Stirling, Joram Mduda, Catherine Mkindi, Valeriana Mayagaya, Grace A. Mwakajinga, Paul T. Nyakyi, Valerian L. Sanga, Dave Carbery, Leah White, Sara Dale, Zhen Jieh Lim, Jeremy J. Baumberg, Pietro Cicuta, Samuel McDermott, Boyko Vodenicharski, and Richard Bowman

Biomed. Opt. Express 11(5), 2447-2460 (2020)  View: HTML | PDF

Cell phone digital microscopy using an oil droplet

Nicole Anna Szydlowski, Haoran Jing, Mohamed Alqashmi, and Ying Samuel Hu

Biomed. Opt. Express 11(5), 2328-2338 (2020)  View: HTML | PDF

Predicting resolution and image quality in RESOLFT and other point scanning microscopes [Invited]

Andreas Bodén, Xavier Casas Moreno, Benjamin K. Cooper, Andrew G. York, and Ilaria Testa

Biomed. Opt. Express 11(5), 2313-2327 (2020)  View: HTML | PDF

MusiJ: an ImageJ plugin for video nanoscopy

Sebastian Acuña, Florian Ströhl, Ida S. Opstad, Balpreet S. Ahluwalia, and Krishna Agarwal

Biomed. Opt. Express 11(5), 2548-2559 (2020)  View: HTML | PDF

Depth-resolved NIR-II fluorescence mesoscope

Jiuling Liao, Yixuan Yin, Jia Yu, Rongli Zhang, Ting Wu, Hui Li, Qinchao Sun, Labao Zhang, and Wei Zheng

Biomed. Opt. Express 11(5), 2366-2372 (2020)  View: HTML | PDF

Imaging human blood cells in vivo with oblique back-illumination capillaroscopy

Gregory N. McKay, Nela Mohan, and Nicholas J. Durr

Biomed. Opt. Express 11(5), 2373-2382 (2020)  View: HTML | PDF  [Suppl. Mat. (5)]

Label-free redox imaging of patient-derived organoids using selective plane illumination microscopy

Peter F. Favreau, Jiaye He, Daniel A. Gil, Dustin A. Deming, Jan Huisken, and Melissa C. Skala

Biomed. Opt. Express 11(5), 2591-2606 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Full-color optically-sectioned imaging by wide-field microscopy via deep-learning

Chen Bai, Jia Qian, Shipei Dang, Tong Peng, Junwei Min, Ming Lei, Dan Dan, and Baoli Yao

Biomed. Opt. Express 11(5), 2619-2632 (2020)  View: HTML | PDF  [Suppl. Mat. (2)]

Label-free assessment of hemodynamics in individual cortical brain vessels using third harmonic generation microscopy

Sung Ji Ahn, Nancy E. Ruiz-Uribe, Baoqiang Li, Jason Porter, Sava Sakadzic, and Chris B. Schaffer

Biomed. Opt. Express 11(5), 2665-2678 (2020)  View: HTML | PDF

High-speed, multi-modal, label-free imaging of pathological slices with a Bessel beam

Chi Liu, Zhifeng Zhao, Cheng Jin, Ying Xiao, Guoqiang Gao, Hao Xie, Qionghai Dai, Hongfang Yin, and Lingjie Kong

Biomed. Opt. Express 11(5), 2694-2704 (2020)  View: HTML | PDF

Accelerating multicolor spectroscopic single-molecule localization microscopy using deep learning

Sunil Kumar Gaire, Yang Zhang, Hongyu Li, Ray Yu, Hao F. Zhang, and Leslie Ying

Biomed. Opt. Express 11(5), 2705-2721 (2020)  View: HTML | PDF

In vivo deep-brain blood flow speed measurement through third-harmonic generation imaging excited at the 1700-nm window

Hongji Liu, Xinlin Chen, Xiangquan Deng, Ziwei Zhuang, Shen Tong, Weixin Xie, Jia Li, Ping Qiu, and Ke Wang

Biomed. Opt. Express 11(5), 2738-2744 (2020)  View: HTML | PDF

Single-cavity dual-wavelength all-fiber femtosecond laser for multimodal multiphoton microscopy

Farhad Akhoundi and N. Peyghambarian

Biomed. Opt. Express 11(5), 2761-2767 (2020)  View: HTML | PDF

Lensless microscopy platform for single cell and tissue visualization

Ramona Corman, Willem Boutu, Anna Campalans, Pablo Radicella, Joana Duarte, Maria Kholodtsova, Laure Bally-Cuif, Nicolas Dray, Fabrice Harms, Guillaume Dovillaire, Samuel Bucourt, and Hamed Merdji

Biomed. Opt. Express 11(5), 2806-2817 (2020)  View: HTML | PDF  [Suppl. Mat. (2)]

Remote scanning for ultra-large field of view in wide-field microscopy and full-field OCT

Gaëlle Recher, Pierre Nassoy, and Amaury Badon

Biomed. Opt. Express 11(5), 2578-2590 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Optimal breast cancer diagnostic strategy using combined ultrasound and diffuse optical tomography

K. M. Shihab Uddin, Menghao Zhang, Mark Anastasio, and Quing Zhu

Biomed. Opt. Express 11(5), 2722-2737 (2020)  View: HTML | PDF

Temporal dynamics of muscle optical properties during degeneration and regeneration in a canine muscle xenograft model

Michael E. Nance, Mohammadreza Ravanfar, Mark Messler, Dongsheng Duan, and Gang Yao

Biomed. Opt. Express 11(5), 2383-2393 (2020)  View: HTML | PDF

Editors' Pick

Deep iterative vessel segmentation in OCT angiography

Theodoros Pissas, Edward Bloch, M. Jorge Cardoso, Blanca Flores, Odysseas Georgiadis, Sepehr Jalali, Claudio Ravasio, Danail Stoyanov, Lyndon Da Cruz, and Christos Bergeles

Biomed. Opt. Express 11(5), 2490-2510 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Characterization of early-stage cutaneous radiation injury by using optical coherence tomography angiography

Jungbin Lee, Won Hyuk Jang, Sehwan Shim, Bumju Kim, Won-Suk Jang, Jae Kyung Myung, Sunhoo Park, and Ki Hean Kim

Biomed. Opt. Express 11(5), 2652-2664 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Lymphatic vessel segmentation in optical coherence tomography by adding U-Net-based CNN for artifact minimization

Pei-Yu Lai, Chung-Hsing Chang, Hong-Ren Su, and Wen-Chuan Kuo

Biomed. Opt. Express 11(5), 2679-2693 (2020)  View: HTML | PDF

Detecting human articular cartilage degeneration in its early stage with polarization-sensitive optical coherence tomography

Xin Zhou, Felipe Eltit, Xiao Yang, Sina Maloufi, Hanadi Alousaimi, Qihao Liu, Lin Huang, Rizhi Wang, and Shuo Tang

Biomed. Opt. Express 11(5), 2745-2760 (2020)  View: HTML | PDF

Imaging intracellular motion with dynamic micro-optical coherence tomography

Hui Min Leung, Michelle L. Wang, Hany Osman, Elham Abouei, Calum MacAulay, Michele Follen, Joseph A. Gardecki, and Guillermo J. Tearney

Biomed. Opt. Express 11(5), 2768-2778 (2020)  View: HTML | PDF

Real-time en-face Gabor optical coherence tomographic angiography on human skin using CUDA GPU

Chaoliang Chen, Weisong Shi, and Victor X. D. Yang

Biomed. Opt. Express 11(5), 2794-2805 (2020)  View: HTML | PDF  [Suppl. Mat. (1)]

Correction propagation for user-assisted optical coherence tomography segmentation: general framework and application to Bruch’s membrane segmentation

Daniel Stromer, Eric M. Moult, Siyu Chen, Nadia K. Waheed, Andreas Maier, and James G. Fujimoto

Biomed. Opt. Express 11(5), 2830-2848 (2020)  View: HTML | PDF

In vivo imaging of the human cornea with high-speed and high-resolution Fourier-domain full-field optical coherence tomography

Egidijus Auksorius, Dawid Borycki, Patrycjusz Stremplewski, Kamil Liżewski, Slawomir Tomczewski, Paulina Niedźwiedziuk, Bartosz L. Sikorski, and Maciej Wojtkowski

Biomed. Opt. Express 11(5), 2849-2865 (2020)  View: HTML | PDF  [Suppl. Mat. (4)]

Use of infrared thermography to detect early alterations of peripheral perfusion: evaluation in a porcine model

Mathieu Magnin, Stephane Junot, Martina Cardinali, Jean Yves Ayoub, Christian Paquet, Vanessa Louzier, Jeanne Marie Bonnet Garin, and Bernard Allaouchiche

Biomed. Opt. Express 11(5), 2431-2446 (2020)  View: HTML | PDF

Photoacoustic imaging of microenvironmental changes in facial cupping therapy

Yingying Zhou, Fei Cao, Huanhao Li, Xiazi Huang, Dongshan Wei, Lidai Wang, and Puxiang Lai

Biomed. Opt. Express 11(5), 2394-2401 (2020)  View: HTML | PDF

Conical ring array detector for large depth of field photoacoustic macroscopy

Paul R. Torke, Robert Nuster, and Guenther Paltauf

Biomed. Opt. Express 11(5), 2461-2475 (2020)  View: HTML | PDF

Dictionary learning technique enhances signal in LED-based photoacoustic imaging

Parastoo Farnia, Ebrahim Najafzadeh, Ali Hariri, Saeedeh Navaei Lavasani, Bahador Makkiabadi, Alireza Ahmadian, and Jesse V. Jokerst

Biomed. Opt. Express 11(5), 2533-2547 (2020)  View: HTML | PDF

Editors' Pick

Photothermally tunable Fabry-Pérot fiber interferometer for photoacoustic mesoscopy

Bohua Chen, Yuwen Chen, and Cheng Ma

Biomed. Opt. Express 11(5), 2607-2618 (2020)  View: HTML | PDF

Terahertz polarization sensing based on metasurface microsensor display anti-proliferation of tumor cells with aspirin

Lei Liu, Tengfei Li, Zixian Liu, Fei Fan, Hongfeng Yuan, Ziyang Zhang, Shengjiang Chang, and Xiaodong Zhang

Biomed. Opt. Express 11(5), 2416-2430 (2020)  View: HTML | PDF

Photonic Bragg waveguide platform for multichannel resonant sensing applications in the THz range

Jingwen Li, Hang Qu, and Jicheng Wang

Biomed. Opt. Express 11(5), 2476-2489 (2020)  View: HTML | PDF

Quantitative analysis of homocysteine in liquid by terahertz spectroscopy

Liping Wang, Xu Wu, Yan Peng, Qingrou Yang, Xiaohong Chen, Wanwan Wu, Yiming Zhu, and Songlin Zhuang

Biomed. Opt. Express 11(5), 2570-2577 (2020)  View: HTML | PDF

Extendable, large-field multi-modal optical imaging system for measuring tissue hemodynamics

Chen Wang, Xiao Chen, Jiachi Hong, Liangwei Meng, Weimin Cheng, Xuan Zhu, Jinling Lu, and Pengcheng Li

Biomed. Opt. Express 11(5), 2339-2351 (2020)  View: HTML | PDF

Exploration of movement artefacts in handheld laser speckle contrast perfusion imaging

Ata Chizari, Tom Knop, Beril Sirmacek, Ferdinand van der Heijden, and Wiendelt Steenbergen

Biomed. Opt. Express 11(5), 2352-2365 (2020)  View: HTML | PDF  [Suppl. Mat. (8)]

Intraoperative tumor margin assessment using diffuse reflectance spectroscopy: the effect of electrosurgery on tissue discrimination using ex vivo animal tissue models

Sara Azizian Amiri, Carlijn M. Van Gent, Jenny Dankelman, and Benno H. W. Hendriks

Biomed. Opt. Express 11(5), 2402-2415 (2020)  View: HTML | PDF

Non-invasive investigation of adipose tissue by time domain diffuse optical spectroscopy

Pranav Lanka, Agnese Segala, Andrea Farina, Sanathana Konugolu Venkata Sekar, Enzo Nisoli, Alessandra Valerio, Paola Taroni, Rinaldo Cubeddu, and Antonio Pifferi

Biomed. Opt. Express 11(5), 2779-2793 (2020)  View: HTML | PDF

Remitted photon path lengths in human skin: in-vivo measurement data

V. Lukinsone, A. Maslobojeva, U. Rubins, M. Kuzminskis, M. Osis, and J. Spigulis

Biomed. Opt. Express 11(5), 2866-2873 (2020)  View: HTML | PDF

Equivalence of two optical quality metrics to predict the visual acuity of multifocal pseudophakic patients

Jesús Armengol, Nuria Garzón, Fidel Vega, Irene Altemir, and Maria S. Millán

Biomed. Opt. Express 11(5), 2818-2829 (2020)  View: HTML | PDF

Multi-scale X-ray phase-contrast tomography of murine heart tissue

Marius Reichardt, Jasper Frohn, Amara Khan, Frauke Alves, and Tim Salditt

Biomed. Opt. Express 11(5), 2633-2651 (2020)  View: HTML | PDF

article thumbnail

Red and white blood cells passing through a vessel in the human tongue in vivo imaged with oblique back-illumination capillaroscopy. See McKay et al. Biomedical Optics Express 11, 2373-2382 (2020)

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