Active image optimization for lattice light sheet microscopy in thick samples

Maxime Malivert, Fabrice Harms, Cynthia Veilly, Jerome Legrand, Ziqiang Li, Emmanuelle Bayer, Daniel Choquet, and Mathieu Ducros

Biomed. Opt. Express 13(12), 6211-6228 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Computational adaptive holographic fluorescence microscopy based on the stochastic parallel gradient descent algorithm

Wenxue Zhang, Tianlong Man, Minghua Zhang, Lu Zhang, and Yuhong Wan

Biomed. Opt. Express 13(12), 6431-6442 (2022)  View: HTML | PDF

Accommodation through simulated multifocal optics

Shrilekha Vedhakrishnan, Alberto de Castro, Maria Vinas, Sara Aissati, and Susana Marcos

Biomed. Opt. Express 13(12), 6695-6710 (2022)  View: HTML | PDF

Adaptive optics visual simulators: a review of recent optical designs and applications [Invited]

Susana Marcos, Pablo Artal, David A. Atchison, Karen Hampson, Richard Legras, Linda Lundström, and Geunyoung Yoon

Biomed. Opt. Express 13(12), 6508-6532 (2022)  View: HTML | PDF

Repeatability and reciprocity of the cone optoretinogram

R. L. Warner, D. H. Brainard, and J. I. W. Morgan

Biomed. Opt. Express 13(12), 6561-6573 (2022)  View: HTML | PDF

Characterizing cone spectral classification by optoretinography

Vimal Prabhu Pandiyan, Sierra Schleufer, Emily Slezak, James Fong, Rishi Upadhyay, Austin Roorda, Ren Ng, and Ramkumar Sabesan

Biomed. Opt. Express 13(12), 6574-6594 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Peripheral detection acuity for interference fringes and screen-based Gabor gratings

Durgasri Jaisankar, Marwan Suheimat, Robert Rosén, and David A. Atchison

Biomed. Opt. Express 13(12), 6645-6658 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Evaluating the effect of ocular aberrations on the simulated performance of a new refractive IOL design using adaptive optics

Carmen M. Lago, Alberto de Castro, Clara Benedí-García, Sara Aissati, and Susana Marcos

Biomed. Opt. Express 13(12), 6682-6694 (2022)  View: HTML | PDF

Resolution and penetration depth of reflection-mode time-domain near infrared optical tomography using a ToF SPAD camera

Jingjing Jiang, Meret Ackermann, Emanuele Russomanno, Aldo Di Costanzo Mata, Edoardo Charbon, Martin Wolf, and Alexander Kalyanov

Biomed. Opt. Express 13(12), 6711-6723 (2022)  View: HTML | PDF

Three-dimensional-generator U-net for dual-resonant scanning multiphoton microscopy image inpainting and denoising

Chia-Wei Hsu, Chun-Yu Lin, Yvonne Yuling Hu, Chi-Yu Wang, Shin-Tsu Chang, Ann-Shyn Chiang, and Shean-Jen Chen

Biomed. Opt. Express 13(12), 6273-6283 (2022)  View: HTML | PDF  [Suppl. Mat. (3)]

Unsupervised segmentation of biomedical hyperspectral image data: tackling high dimensionality with convolutional autoencoders

Ciaran Bench, Jayakrupakar Nallala, Chun-Chin Wang, Hannah Sheridan, and Nicholas Stone

Biomed. Opt. Express 13(12), 6373-6388 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Motion-tracking Brillouin microscopy for in-vivo corneal biomechanics mapping

Hongyuan Zhang, Lara Asroui, J. Bradley Randleman, and Giuliano Scarcelli

Biomed. Opt. Express 13(12), 6196-6210 (2022)  View: HTML | PDF

High-fidelity optical diffraction tomography of live organisms using iodixanol refractive index matching

Dohyeon Lee, Moosung Lee, Haechan Kwak, Young Seo Kim, Jaehyu Shim, Jik Han Jung, Wei-sun Park, Ji-Ho Park, Sumin Lee, and YongKeun Park

Biomed. Opt. Express 13(12), 6404-6415 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Miniaturized structured illumination microscopy using two 3-axis MEMS micromirrors

Peter Tinning, Mark Donnachie, Jay Christopher, Deepak Uttamchandani, and Ralf Bauer

Biomed. Opt. Express 13(12), 6443-6456 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Tunable image projection spectrometry

Qi Cui, Jongchan Park, Jaeyul Lee, Zhaoqiang Wang, and Liang Gao

Biomed. Opt. Express 13(12), 6457-6469 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Biomass measurements of single neurites in vitro using optical wavefront microscopy

Ljiljana Durdevic, Aroa Relaño Ginés, Antoine Roueff, Guillaume Blivet, and Guillaume Baffou

Biomed. Opt. Express 13(12), 6550-6560 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Light-field microscopy with temporal focusing multiphoton illumination for scanless volumetric bioimaging

Feng-Chun Hsu, Chun-Yu Lin, Yvonne Yuling Hu, Yeu-kuang Hwu, Ann-Shyn Chiang, and Shean-Jen Chen

Biomed. Opt. Express 13(12), 6610-6620 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Polarization effects on the fluorescence emission of zebrafish neurons using light-sheet microscopy

Hong Ye, Xin Xu, Jixiang Wang, Jing Wang, Yi He, Yu Mu, and Guohua Shi

Biomed. Opt. Express 13(12), 6733-6744 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Excitation-based fully connected network for precise NIR-II fluorescence molecular tomography

Caiguang Cao, Anqi Xiao, Meishan Cai, Biluo Shen, Lishuang Guo, Xiaojing Shi, Jie Tian, and Zhenhua Hu

Biomed. Opt. Express 13(12), 6284-6299 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Optical analysis of Müller glia cells as light transporters through the retina

Levente Szabó, Gábor Erdei, and Pál Andor Maák

Biomed. Opt. Express 13(12), 6335-6356 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Detection of fluorescence-labeled DNA with in-plane organic optoelectronic devices

Igor Titov, Nils Rutschke, Fabio A. Kraft, Markus Köpke, Eric Nebling, and Martina Gerken

Biomed. Opt. Express 13(12), 6300-6316 (2022)  View: HTML | PDF

Stable sensing platform for diagnosing electrolyte disturbance using laser-induced breakdown spectroscopy

Weiliang Wang, Yuanchao Liu, Yanwu Chu, Siyi Xiao, Junfei Nie, Junlong Zhang, Jianwei Qi, and Lianbo Guo

Biomed. Opt. Express 13(12), 6778-6790 (2022)  View: HTML | PDF

Wavelet attention network for the segmentation of layer structures on OCT images

Cong Wang and Meng Gan

Biomed. Opt. Express 13(12), 6167-6181 (2022)  View: HTML | PDF

Monte Carlo-based full-wavelength simulator of Fourier-domain optical coherence tomography

Jianing Mao, Yuye Ling, Ping Xue, and Yikai Su

Biomed. Opt. Express 13(12), 6317-6334 (2022)  View: HTML | PDF

Self-supervised speckle noise reduction of optical coherence tomography without clean data

Yangxi Li, Yingwei Fan, and Hongen Liao

Biomed. Opt. Express 13(12), 6357-6372 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

OCT based four-dimensional cardiac imaging of a living chick embryo using an impedance signal as a gating for post-acquisition synchronization

Yushu Ma, Chuanxi Li, Huiwen Jiang, Yuqian Zhao, Jian Liu, Yao Yu, Yi Wang, Wenbo Shi, and Zhenhe Ma

Biomed. Opt. Express 13(12), 6595-6609 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

In situ assessment of lens elasticity with noncontact optical coherence elastography

Yulei Chen, Shuling Ye, Qingying Wang, Meixiao Shen, Fan Lu, Jia Qu, and Dexi Zhu

Biomed. Opt. Express 13(12), 6671-6681 (2022)  View: HTML | PDF

Diffuse reflectance spectroscopy sensor to differentiate between glial tumor and healthy brain tissue: a proof-of-concept study

Simon Skyrman, Gustav Burström, Marco Lai, Francesca Manni, Benno Hendriks, Arvid Frostell, Erik Edström, Oscar Persson, and Adrian Elmi-Terander

Biomed. Opt. Express 13(12), 6470-6483 (2022)  View: HTML | PDF

Decoherence of photon entanglement by transmission through brain tissue with Alzheimer’s disease

E. J. Galvez, B. Sharma, F. K. Williams, C.-J. You, B. Khajavi, J. Castrillon, L. Shi, S. Mamani, L. A. Sordillo, L. Zhang, and R. R. Alfano

Biomed. Opt. Express 13(12), 6621-6630 (2022)  View: HTML | PDF

High-throughput and high-accuracy diagnosis of multiple myeloma with multi-object detection

Liye Mei, Hui Shen, Yalan Yu, Yueyun Weng, Xiaoxiao Li, Kashif Rafiq Zahid, Jin Huang, Du Wang, Sheng Liu, Fuling Zhou, and Cheng Lei

Biomed. Opt. Express 13(12), 6631-6644 (2022)  View: HTML | PDF

Contactless SpO₂ with an RGB camera: experimental proof of calibrated SpO₂

Mark van Gastel and Wim Verkruysse

Biomed. Opt. Express 13(12), 6791-6802 (2022)  View: HTML | PDF

Non-invasive optical monitoring of human lungs: Monte Carlo modeling of photon migration in Visible Chinese Human and an experimental test on a human

Jianghui Guo, Shuo Meng, Hengjie Su, Bowen Zhang, and Ting Li

Biomed. Opt. Express 13(12), 6389-6403 (2022)  View: HTML | PDF

Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source

Mengjie Shi, Tom Vercauteren, and Wenfeng Xia

Biomed. Opt. Express 13(12), 6416-6430 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Detectability of low-oxygenated regions in human muscle tissue using near-infrared spectroscopy and phantom models

Tarcisi Cantieni, Oliver da Silva-Kress, and Ursula Wolf

Biomed. Opt. Express 13(12), 6182-6195 (2022)  View: HTML | PDF

Multispectral intraoperative imaging for the detection of the hemodynamic response to interictal epileptiform discharges

Audrey Laurence, Dènahin H. Toffa, Ke Peng, Manon Robert, Alain Bouthillier, Dang K. Nguyen, and Frederic Leblond

Biomed. Opt. Express 13(12), 6245-6257 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Smartphone-based single snapshot spatial frequency domain imaging

Jesse H. Lam, Kelsey J. Tu, Jeonghun Kim, and Sehwan Kim

Biomed. Opt. Express 13(12), 6497-6507 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Model of dynamic speckle evolution for evaluating laser speckle contrast measurements of tissue dynamics

Sharvari Zilpelwar, Edbert J. Sie, Dmitry Postnov, Anderson Ichun Chen, Bernhard Zimmermann, Francesco Marsili, David A. Boas, and Xiaojun Cheng

Biomed. Opt. Express 13(12), 6533-6549 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Laser speckle simulation tool based on stochastic differential equations for bio imaging applications

Murali K and Hari M. Varma

Biomed. Opt. Express 13(12), 6745-6762 (2022)  View: HTML | PDF  [Suppl. Mat. (4)]

Impact of preprocessing methods on the Raman spectra of brain tissue

Joel Wahl, Elisabeth Klint, Martin Hallbeck, Jan Hillman, Karin Wårdell, and Kerstin Ramser

Biomed. Opt. Express 13(12), 6763-6777 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

Assessing and compensating for the confounding factors in Scheimpflug-based corneal densitometry

Maria Miażdżyk, Alejandra Consejo, and D. Robert Iskander

Biomed. Opt. Express 13(12), 6258-6272 (2022)  View: HTML | PDF

Light scattering from a diffractive-refractive intraocular lens: a goniometer-based approach for individual zone assessment

Grzegorz Łabuz, Thomas J. T. P. van den Berg, Gerd U. Auffarth, and Ramin Khoramnia

Biomed. Opt. Express 13(12), 6724-6732 (2022)  View: HTML | PDF