Biomedical Optics Express recognizes the 2023 best paper prize winners: editorial

Ruikang K. Wang and Sina Farsiu

Biomed. Opt. Express 15(2), 1148-1149 (2024)  View: HTML | PDF

Plethysmographic assessment of vasomotor response in patients with congestive heart failure before and after heart transplantation

Oleg V. Mamontov, Valeriy V. Zaytsev, and Alexei A. Kamshilin

Biomed. Opt. Express 15(2), 687-699 (2024)  View: HTML | PDF

Optical biosensor based on weak measurement for ultra-sensitive detection of calreticulin in human serum

Zhikang Peng, Jiali Chen, Yufei Liu, Dongmei Li, Yixiao Li, Qihao Zhang, Chaoyi Chen, Ying Zhang, Jia Yao, Shuqian Wang, Qiang Lin, and Yi Ruan

Biomed. Opt. Express 15(2), 715-724 (2024)  View: HTML | PDF

Cascaded plastic optical fiber based SPR sensor for simultaneous measurement of refractive index and temperature

Chuanxin Teng, Xinjing Li, Ming Chen, Shijie Deng, Hongchang Deng, Minmin Xue, Libo Yuan, Rui Min, Xiaosong Fu, and Xuehao Hu

Biomed. Opt. Express 15(2), 793-801 (2024)  View: HTML | PDF

Non-contact, highly sensitive sugar concentration detection based on a Co₃Sn₂S₂ Weyl semimetal thin film sensor by terahertz wave

Hongyi Lin, Zichen Zhang, Feilong Gao, Jianjian Ruan, Dong Sun, Shaodong Hou, Bingyuan Zhang, and Qi Song

Biomed. Opt. Express 15(2), 965-972 (2024)  View: HTML | PDF

Rigid alignment method for secondary analyses of optical coherence tomography volumes

Andrew Cornelio, Ana Collazo Martinez, Hanzhang Lu, Craig Jones, and Amir H. Kashani

Biomed. Opt. Express 15(2), 938-952 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

High-accuracy 3D segmentation of wet age-related macular degeneration via multi-scale and cross-channel feature extraction and channel attention

Meixuan Li, Yadan Shen, Renxiong Wu, Shaoyan Huang, Fei Zheng, Sizhu Chen, Rong Wang, Wentao Dong, Jie Zhong, Guangming Ni, and Yong Liu

Biomed. Opt. Express 15(2), 1115-1131 (2024)  View: HTML | PDF  [Suppl. Mat. (33)]

MCOCT: an experimentally and numerically validated, open-source Monte Carlo simulator for optical coherence tomography

Khaliun Erdenedalai, Raphaël Maltais-Tariant, Mathieu Dehaes, and Caroline Boudoux

Biomed. Opt. Express 15(2), 624-640 (2024)  View: HTML | PDF

Automatic montaging of adaptive optics SLO retinal images based on graph theory

Ting Luo, Robert N. Gilbert, Kaitlyn A. Sapoznik, Brittany R. Walker, and Stephen A. Burns

Biomed. Opt. Express 15(2), 1021-1037 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Precision and bias in dynamic light scattering optical coherence tomography measurements of diffusion and flow

Konstantine Cheishvili, Bernd Rieger, and Jeroen Kalkman

Biomed. Opt. Express 15(2), 1288-1310 (2024)  View: HTML | PDF

Comprehensive workflow and its validation for simulating diffuse speckle statistics for optical blood flow measurements

Lisa Kobayashi Frisk, Manish Verma, Faruk Bešlija, Chen-Hao P. Lin, Nishighanda Patil, Sumana Chetia, Jason W. Trobaugh, Joseph P. Culver, and Turgut Durduran

Biomed. Opt. Express 15(2), 875-899 (2024)  View: HTML | PDF

Improvements and validation of a spatiotemporal speckle correlation model for rolling shutter speckle imaging

Changyoon Yi, Sangjun Byun, Yujin Lee, and Seung Ah Lee

Biomed. Opt. Express 15(2), 1253-1267 (2024)  View: HTML | PDF

High contrast breast cancer biomarker semi-quantification and immunohistochemistry imaging using upconverting nanoparticles

Sanathana Konugolu Venkata Sekar, Hui Ma, Katarzyna Komolibus, Gokhan Dumlupinar, Matthias J. Mickert, Krzysztof Krawczyk, and Stefan Andersson-Engels

Biomed. Opt. Express 15(2), 900-909 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Multiplane differential saturated excitation microscopy using varifocal lenses

Chi-Hao Luo, Sunil Vyas, Kuang-yuh Huang, Shi-Wei Chu, and Yuan Luo

Biomed. Opt. Express 15(2), 953-964 (2024)  View: HTML | PDF

Simultaneous label-free autofluorescence multi-harmonic microscopy driven by the supercontinuum generated from a bulk nonlinear crystal

Alejandro De la Cadena, Jaena Park, Kayvan F. Tehrani, Carlos A. Renteria, Guillermo L. Monroy, and Stephen A. Boppart

Biomed. Opt. Express 15(2), 491-505 (2024)  View: HTML | PDF

Biomedical Optics Express Feature Issue Introduction: Optical Manipulation and Its Applications (OMA) 2023

Philip Jones, Silvie Bernatová, and Domna G. Kotsifaki

Biomed. Opt. Express 15(2), 1192-1194 (2024)  View: HTML | PDF

Tired and stressed: direct holographic quasi-static stretching of aging echinocytes and discocytes in plasma using optical tweezers [Invited]

Alexander B. Stilgoe, Anatolii V. Kashchuk, Marie-Anne Balanant, Deborah Santangelo, Timo A. Nieminen, Emilie Sauret, Robert Flower, and Halina Rubinsztein-Dunlop

Biomed. Opt. Express 15(2), 656-671 (2024)  View: HTML | PDF

Hybrid heterogeneous phantoms for biomedical applications: a demonstration to dosimetry validation

M. Daniyal Ghauri, Stefan Šušnjar, Claudia Nunzia Guadagno, Somdatta Bhattacharya, Björn Thomasson, Johannes Swartling, Rekha Gautam, Stefan Andersson-Engels, and Sanathana Konugolu Venkata Sekar

Biomed. Opt. Express 15(2), 863-874 (2024)  View: HTML | PDF

Comprehensive advancement in endoscopy: optical design, algorithm enhancement, and clinical validation for merged WLI and CBI imaging

Ye Fu, Shipeng Zhang, Longfei Ma, Zhe Zhao, Hongen Liao, and Tianyu Xie

Biomed. Opt. Express 15(2), 506-523 (2024)  View: HTML | PDF

Automatic zoning for retinopathy of prematurity with a key area location system

Yuanyuan Peng, Hua Xu, Lei Zhao, Weifang Zhu, Fei Shi, Meng Wang, Yi Zhou, Kehong Feng, and Xinjian Chen

Biomed. Opt. Express 15(2), 725-742 (2024)  View: HTML | PDF

MAFE-Net: retinal vessel segmentation based on a multiple attention-guided fusion mechanism and ensemble learning network

Yuanyuan Peng, Yingjie Tang, Pengpeng Luan, Zixu Zhang, and Hongbin Tu

Biomed. Opt. Express 15(2), 843-862 (2024)  View: HTML | PDF

Multi-kernel driven 3D convolutional neural network for automated detection of lung nodules in chest CT scans

Ruoyu Wu, Changyu Liang, Jiuquan Zhang, QiJuan Tan, and Hong Huang

Biomed. Opt. Express 15(2), 1195-1218 (2024)  View: HTML | PDF

Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image

Chenkun Ge, Xiaojun Yu, Miao Yuan, Zeming Fan, Jinna Chen, Perry Ping Shum, and Linbo Liu

Biomed. Opt. Express 15(2), 1233-1252 (2024)  View: HTML | PDF

Substrip-based registration and automatic montaging of adaptive optics retinal images

Ruixue Liu, Xiaolin Wang, Sujin Hoshi, and Yuhua Zhang

Biomed. Opt. Express 15(2), 1311-1330 (2024)  View: HTML | PDF  [Suppl. Mat. (4)]

Numerical study of a convective cooling strategy for increasing safe power levels in two-photon brain imaging

Aditya Roy and Adela Ben-Yakar

Biomed. Opt. Express 15(2), 540-557 (2024)  View: HTML | PDF

Single-shot Fourier ptychographic microscopy with isotropic lateral resolution via polarization-multiplexed LED illumination

Chuanjian Zheng, Shaohui Zhang, Siying Liu, Delong Yang, and Qun Hao

Biomed. Opt. Express 15(2), 672-686 (2024)  View: HTML | PDF

Rapid clearing and imaging of Mohs and melanoma surgical margins using a low-cost tissue processor

Chi Z. Huang, Jenna E. Montague, Vincent D. Ching-Roa, Michael G. Drage, Sherrif F. Ibrahim, and Michael G. Giacomelli

Biomed. Opt. Express 15(2), 700-714 (2024)  View: HTML | PDF

Impact of a tilted coverslip on two-photon and STED microscopy

Guillaume Le Bourdellès, Luc Mercier, Johannes Roos, Stéphane Bancelin, and U. Valentin Nägerl

Biomed. Opt. Express 15(2), 743-752 (2024)  View: HTML | PDF  [Suppl. Mat. (2)]

Optical diffraction tomography for assessing single cell models in angular light scattering

Kaitlin J. Dunn, Alex Matlock, George Funkenbusch, Zahid Yaqoob, Peter T. C. So, and Andrew J. Berger

Biomed. Opt. Express 15(2), 973-990 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Fast, multicolour optical sectioning over extended fields of view with patterned illumination and machine learning

Edward N. Ward, Rebecca M. McClelland, Jacob R. Lamb, Roger Rubio-Sánchez, Charles N. Christensen, Bismoy Mazumder, Sofia Kapsiani, Luca Mascheroni, Lorenzo Di Michele, Gabriele S. Kaminski Schierle, and Clemens F. Kaminski

Biomed. Opt. Express 15(2), 1074-1088 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Fast light-field 3D microscopy with out-of-distribution detection and adaptation through conditional normalizing flows

Josué Page Vizcaíno, Panagiotis Symvoulidis, Zeguan Wang, Jonas Jelten, Paolo Favaro, Edward S. Boyden, and Tobias Lasser

Biomed. Opt. Express 15(2), 1219-1232 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Validation of an automated method for studying retinal capillary blood flow

Srividya Neriyanuri, Phillip Bedggood, R. C. Andrew Symons, and Andrew B. Metha

Biomed. Opt. Express 15(2), 802-817 (2024)  View: HTML | PDF

SLAM medical imaging enabled by a pre-chirp and gain jointly managed Yb-fiber laser

Yuting Xing, Runzhi Chen, Lihao Zhang, Yaobing Chen, Shu Zhang, Xincai Diao, Yang Liu, Yishi Shi, Zhiyi Wei, and Guoqing Chang

Biomed. Opt. Express 15(2), 911-923 (2024)  View: HTML | PDF

Combining near infrared fluorescence and laser speckle imaging with optical tissue clearing for in vivo transcranial monitoring of cerebral blood vessels damaged by photodynamic nanoformulation

Jiantao Liu, Hao Xu, Siqi Gao, Liwei Liu, Junle Qu, and Tymish Y. Ohulchanskyy

Biomed. Opt. Express 15(2), 924-937 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Multiscale imaging of corneal endothelium damage and Rho-kinase inhibitor application in mouse models of acute ocular hypertension

Zhen Cai, Yang Zhang, Raymond S. Fang, Benjamin Brenner, Junghun Kweon, Cheng Sun, Jeffrey L. Goldberg, and Hao F. Zhang

Biomed. Opt. Express 15(2), 1102-1114 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

SERS microfluidic chip integrated with double amplified signal off-on strategy for detection of microRNA in NSCLC

Jiashan Zhu, Jinhua Luo, Zhaolai Hua, Xiang Feng, and Xiaowei Cao

Biomed. Opt. Express 15(2), 594-607 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Lung cancer cells detection by a photoelectrochemical MoS₂ biosensing chip

Chun-Liang Lai, Riya Karmakar, Arvind Mukundan, Wei-Chung Chen, I-Chen Wu, Vladimir E. Fedorov, Shih-Wei Feng, Ubol Choomjinda, Shu-Fang Huang, and Hsiang-Chen Wang

Biomed. Opt. Express 15(2), 753-771 (2024)  View: HTML | PDF

Unpaired intra-operative OCT (iOCT) video super-resolution with contrastive learning

Charalampos Komninos, Theodoros Pissas, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, and Christos Bergeles

Biomed. Opt. Express 15(2), 772-788 (2024)  View: HTML | PDF  [Suppl. Mat. (8)]

High-accuracy noninvasive continuous glucose monitoring using OCT angiography-purified blood scattering signals in human skin

Mengqin Gao, Dayou Guo, Jiahao Wang, Yizhou Tan, Kaiyuan Liu, Lei Gao, Yulei Zhang, Zhihua Ding, Ying Gu, and Peng Li

Biomed. Opt. Express 15(2), 991-1003 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Phase unwrapping for MHz optical coherence elastography and application to brain tumor tissue

Sazgar Burhan, Nicolas Detrez, Katharina Rewerts, Paul Strenge, Steffen Buschschlüter, Jessica Kren, Christian Hagel, Matteo Mario Bonsanto, Ralf Brinkmann, and Robert Huber

Biomed. Opt. Express 15(2), 1038-1058 (2024)  View: HTML | PDF  [Suppl. Mat. (6)]

Real-time line-field optical coherence tomography for cellular resolution imaging of biological tissue

Kai Neuhaus, Shanjida Khan, Omkar Thaware, Shuibin Ni, Mini Aga, Yali Jia, Travis Redd, Siyu Chen, David Huang, and Yifan Jian

Biomed. Opt. Express 15(2), 1059-1073 (2024)  View: HTML | PDF  [Suppl. Mat. (4)]

Five degrees-of-freedom mechanical arm with remote center of motion (RCM) device for volumetric optical coherence tomography (OCT) retinal imaging

Elan Ahronovich, Jin-Hui Shen, Tegy J. Vadakkan, Ratna Prasad, Karen M. Joos, and Nabil Simaan

Biomed. Opt. Express 15(2), 1150-1162 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Multifunctional adaptive optics optical coherence tomography allows cellular scale reflectometry, polarimetry, and angiography in the living human eye

Kazuhiro Kurokawa and Morgan Nemeth

Biomed. Opt. Express 15(2), 1331-1354 (2024)  View: HTML | PDF  [Suppl. Mat. (6)]

Advanced technique of myocardial no-reflow quantification using indocyanine green

Dmitry Sonin, Garry Papayan, Maria Istomina, Ilya Anufriev, Evgeniia Pochkaeva, Sarkis Minasian, Ekaterina Zaytseva, Daria Mukhametdinova, Daniil Mochalov, Ilia Aleksandrov, Nickolay Petrishchev, and Michael Galagudza

Biomed. Opt. Express 15(2), 818-833 (2024)  View: HTML | PDF

Convolutional sparse coding for compressed sensing photoacoustic CT reconstruction with partially known support

Zezheng Qin, Yiming Ma, Lingyu Ma, Guangxing Liu, and Mingjian Sun

Biomed. Opt. Express 15(2), 524-539 (2024)  View: HTML | PDF

Exploring the impedance-matching effect in terahertz reflection imaging of skin tissue

Seung Jae Oh, Inhee Maeng, Ki Suck Nam, Yeo Jun Yoon, Jin-Kyung Shim, Ji Su Kim, Suck-Gu Kang, Min Yong Jeon, and Han-Cheol Ryu

Biomed. Opt. Express 15(2), 834-842 (2024)  View: HTML | PDF

Multispectral indices for real-time and non-invasive tissue ischemia monitoring using snapshot cameras

Jens De Winne, Anoek Strumane, Danilo Babin, Siri Luthman, Hiep Luong, and Wilfried Philips

Biomed. Opt. Express 15(2), 641-655 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Fibre-optic based exploration of lung cancer autofluorescence using spectral fluorescence lifetime

Alexandra C. Adams, András Kufcsák, Charles Lochenie, Mohsen Khadem, Ahsan R. Akram, Kevin Dhaliwal, and Sohan Seth

Biomed. Opt. Express 15(2), 1132-1147 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Head-mounted adaptive optics visual simulator

Shoaib R. Soomro, Santiago Sager, Alba M. Paniagua-Diaz, Pedro M. Prieto, and Pablo Artal

Biomed. Opt. Express 15(2), 608-623 (2024)  View: HTML | PDF

Measuring the visual angle of polarization-related entoptic phenomena using structured light

C. Kapahi, A. E. Silva, D. G. Cory, M. Kulmaganbetov, M. A. Mungalsingh, D. A. Pushin, T. Singh, B. Thompson, and D. Sarenac

Biomed. Opt. Express 15(2), 1278-1287 (2024)  View: HTML | PDF  [Suppl. Mat. (1)]

Clarification on the understanding of contrast theory in relation to the article “ON and OFF receptive field processing in the presence of optical scattering”: comment

Jay Neitz and Maureen Neitz

Biomed. Opt. Express 15(2), 789-792 (2024)  View: HTML | PDF

Optical parameters estimation in inhomogeneous turbid media using backscattered light: for transcutaneous scattering measurement of intravascular blood: erratum

Shiyang Liang, Takeo Miyake, and Koichi Shimizu

Biomed. Opt. Express 15(2), 910-910 (2024)  View: HTML | PDF