Introduction to the BIOMED 2016 feature issue

David D. Sampson, Hamid Dehghani, Elizabeth M. C. Hillman, and Thomas D. Wang

Biomed. Opt. Express 7(11), 4415-4415 (2016)  View: HTML | PDF

Diet-induced obesity skin changes monitored by in vivo SHG and ex vivo CARS microscopy

Dóra Haluszka, Kende Lőrincz, Norbert Kiss, Róbert Szipőcs, Enikő Kuroli, Nóra Gyöngyösi, and Norbert M. Wikonkál

Biomed. Opt. Express 7(11), 4480-4489 (2016)  View: HTML | PDF

Extended-focus optical coherence microscopy for high-resolution imaging of the murine brain

Szymon Tamborski, Hong Chou Lyu, Hubert Dolezyczek, Monika Malinowska, Grzegorz Wilczynski, Daniel Szlag, Theo Lasser, Maciej Wojtkowski, and Maciej Szkulmowski

Biomed. Opt. Express 7(11), 4400-4414 (2016)  View: HTML | PDF  [Suppl. Mat. (1)]

Cerebral blood flow is decoupled from blood pressure and linked to EEG bursting after resuscitation from cardiac arrest

Christian Crouzet, Robert H. Wilson, Afsheen Bazrafkan, Maryam H. Farahabadi, Donald Lee, Juan Alcocer, Bruce J. Tromberg, Bernard Choi, and Yama Akbari

Biomed. Opt. Express 7(11), 4660-4673 (2016)  View: HTML | PDF

Development of a multi-wavelength diffuse optical tomography system for early diagnosis of rheumatoid arthritis: simulation, phantoms and healthy human studies

Hao Yang Wu, Andrew Filer, Iain Styles, and Hamid Dehghani

Biomed. Opt. Express 7(11), 4769-4786 (2016)  View: HTML | PDF

Non-stationary reconstruction for dynamic fluorescence molecular tomography with extended kalman filter

Xin Liu, Hongkai Wang, and Zhuangzhi Yan

Biomed. Opt. Express 7(11), 4527-4542 (2016)  View: HTML | PDF

Fabrication and analysis of microfiber array platform for optogenetics with cellular resolution

Jian-Hong Chen, Ming-Yi Chou, Chien-Yuan Pan, and Lon A. Wang

Biomed. Opt. Express 7(11), 4416-4423 (2016)  View: HTML | PDF

Optical redox ratio identifies metastatic potential-dependent changes in breast cancer cell metabolism

Kinan Alhallak, Lisa G. Rebello, Timothy J. Muldoon, Kyle P. Quinn, and Narasimhan Rajaram

Biomed. Opt. Express 7(11), 4364-4374 (2016)  View: HTML | PDF

Rapid mesoscale multiphoton microscopy of human skin

Mihaela Balu, Hideharu Mikami, Jue Hou, Eric O. Potma, and Bruce J. Tromberg

Biomed. Opt. Express 7(11), 4375-4387 (2016)  View: HTML | PDF  [Suppl. Mat. (2)]

Motion-corrected Fourier ptychography

Liheng Bian, Guoan Zheng, Kaikai Guo, Jinli Suo, Changhuei Yang, Feng Chen, and Qionghai Dai

Biomed. Opt. Express 7(11), 4543-4553 (2016)  View: HTML | PDF

Ultrahigh-speed, phase-sensitive full-field interferometric confocal microscopy for quantitative microscale physiology

Ikbal Sencan, Brendan K. Huang, Yong Bian, Emily Mis, Mustafa K. Khokha, Hui Cao, and Michael Choma

Biomed. Opt. Express 7(11), 4674-4684 (2016)  View: HTML | PDF  [Suppl. Mat. (4)]

Single-frame rapid autofocusing for brightfield and fluorescence whole slide imaging

Jun Liao, Liheng Bian, Zichao Bian, Zibang Zhang, Charmi Patel, Kazunori Hoshino, Yonina C. Eldar, and Guoan Zheng

Biomed. Opt. Express 7(11), 4763-4768 (2016)  View: HTML | PDF

Wide-field Fourier ptychographic microscopy using laser illumination source

Jaebum Chung, Hangwen Lu, Xiaoze Ou, Haojiang Zhou, and Changhuei Yang

Biomed. Opt. Express 7(11), 4787-4802 (2016)  View: HTML | PDF

Simple approach to three-color two-photon microscopy by a fiber-optic wavelength convertor

Kuen-Che Li, Lynn L. H. Huang, Jhih-Hao Liang, and Ming-Che Chan

Biomed. Opt. Express 7(11), 4803-4815 (2016)  View: HTML | PDF

Characterization of fiber-optic light delivery and light-induced temperature changes in a rodent brain for precise optogenetic neuromodulation

Younghoon Shin, Minsu Yoo, Hyung-Sun Kim, Sung-Ki Nam, Hyoung-Ihl Kim, Sun-Kyu Lee, Sohee Kim, and Hyuk-Sang Kwon

Biomed. Opt. Express 7(11), 4450-4471 (2016)  View: HTML | PDF

Photolysis of a peptide with N-peptidyl-7-nitroindoline units using two-photon absorption

Kevin A. Hatch, Alfredo Ornelas, Kaitlyn N. Williams, Thomas Boland, Katja Michael, and Chunqiang Li

Biomed. Opt. Express 7(11), 4654-4659 (2016)  View: HTML | PDF

Influence of coherence length, signal-to-noise ratio, log transform, and low-pass filtering on layer thickness assessment with OCT in the retina

Nomdo M. Jansonius, Joel Cervantes, Maddipatla Reddikumar, and Barry Cense

Biomed. Opt. Express 7(11), 4490-4500 (2016)  View: HTML | PDF

Intracellular dynamics measurements with full field optical coherence tomography suggest hindering effect of actomyosin contractility on organelle transport

Charles-Edouard Leroux, Fabien Bertillot, Olivier Thouvenin, and Albert-Claude Boccara

Biomed. Opt. Express 7(11), 4501-4513 (2016)  View: HTML | PDF

Label-free fast 3D coherent imaging reveals pancreatic islet micro-vascularization and dynamic blood flow

Corinne Berclaz, Daniel Szlag, David Nguyen, Jérôme Extermann, Arno Bouwens, Paul J. Marchand, Julia Nilsson, Anja Schmidt-Christensen, Dan Holmberg, Anne Grapin-Botton, and Theo Lasser

Biomed. Opt. Express 7(11), 4569-4580 (2016)  View: HTML | PDF

Long-range, wide-field swept-source optical coherence tomography with GPU accelerated digital lock-in Doppler vibrography for real-time, in vivo middle ear diagnostics

Dan MacDougall, Joshua Farrell, Jeremy Brown, Manohar Bance, and Robert Adamson

Biomed. Opt. Express 7(11), 4621-4635 (2016)  View: HTML | PDF  [Suppl. Mat. (5)]

Nonlinear characterization of elasticity using quantitative optical coherence elastography

Yi Qiu, Farzana R. Zaki, Namas Chandra, Shawn A. Chester, and Xuan Liu

Biomed. Opt. Express 7(11), 4702-4710 (2016)  View: HTML | PDF  [Suppl. Mat. (1)]

Long-range and wide field of view optical coherence tomography for in vivo 3D imaging of large volume object based on akinetic programmable swept source

Shaozhen Song, Jingjiang Xu, and Ruikang K. Wang

Biomed. Opt. Express 7(11), 4734-4748 (2016)  View: HTML | PDF

Development and preliminary results of bimanual smart micro-surgical system using a ball-lens coupled OCT distance sensor

Dongwoo Koo, Hyun-Cheol Park, Peter L. Gehlbach, and Cheol Song

Biomed. Opt. Express 7(11), 4816-4826 (2016)  View: HTML | PDF

Combined frequency domain photoacoustic and ultrasound imaging for intravascular applications

Robin F. Castelino, Michael Hynes, Chelsea E. Munding, Sergey Telenkov, and F. Stuart Foster

Biomed. Opt. Express 7(11), 4441-4449 (2016)  View: HTML | PDF

Terahertz identification and quantification of neurotransmitter and neurotrophy mixture

Yan Peng, Xiaorong Yuan, Xiang Zou, Wanqing Chen, Hui Huang, Hongwei Zhao, Bo Song, Liang Chen, and Yiming Zhu

Biomed. Opt. Express 7(11), 4472-4479 (2016)  View: HTML | PDF

Freeze-thaw hysteresis effects in terahertz imaging of biomedical tissues

Yuezhi He, Benjamin S.-Y. Ung, Edward P. J. Parrott, Anil T. Ahuja, and Emma Pickwell-MacPherson

Biomed. Opt. Express 7(11), 4711-4717 (2016)  View: HTML | PDF

Thermal therapy with magnetic nanoparticles for cell destruction

Adi Vegerhof, Menachem Motei, Arkady Rudinzky, Dror Malka, Rachela Popovtzer, and Zeev Zalevsky

Biomed. Opt. Express 7(11), 4581-4594 (2016)  View: HTML | PDF

Kagome fiber based ultrafast laser microsurgery probe delivering micro-Joule pulse energies

Kaushik Subramanian, Ilan Gabay, Onur Ferhanoğlu, Adam Shadfan, Michal Pawlowski, Ye Wang, Tomasz Tkaczyk, and Adela Ben-Yakar

Biomed. Opt. Express 7(11), 4639-4653 (2016)  View: HTML | PDF

Multi-channel multi-distance broadband near-infrared spectroscopy system to measure the spatial response of cellular oxygen metabolism and tissue oxygenation

Phong Phan, David Highton, Jonathan Lai, Martin Smith, Clare Elwell, and Ilias Tachtsidis

Biomed. Opt. Express 7(11), 4424-4440 (2016)  View: HTML | PDF

Subtraction-based approach for enhancing the depth sensitivity of time-resolved NIRS

Daniel Milej, Androu Abdalmalak, Peter McLachlan, Mamadou Diop, Adam Liebert, and Keith. St. Lawrence

Biomed. Opt. Express 7(11), 4514-4526 (2016)  View: HTML | PDF

Quantifying the effect of adipose tissue in muscle oximetry by near infrared spectroscopy

Nassim Nasseri, Stefan Kleiser, Daniel Ostojic, Tanja Karen, and Martin Wolf

Biomed. Opt. Express 7(11), 4605-4619 (2016)  View: HTML | PDF

In-vivo monitoring of tissue oxygen saturation in deep brain structures using a single fiber optical system

Linhui Yu, Ying Wu, Jeff F. Dunn, and Kartikeya Murari

Biomed. Opt. Express 7(11), 4685-4694 (2016)  View: HTML | PDF

Experimental results of full scattering profile from finger tissue-like phantom

Idit Feder, Maciej Wróbel, Hamootal Duadi, Małgorzata Jędrzejewska-Szczerska, and Dror Fixler

Biomed. Opt. Express 7(11), 4695-4701 (2016)  View: HTML | PDF

Skin inhomogeneity as a source of error in remote PPG-imaging

Andreia Vieira Moço, Sander Stuijk, and Gerard de Haan

Biomed. Opt. Express 7(11), 4718-4733 (2016)  View: HTML | PDF

Using electron microscopy to calculate optical properties of biological samples

Wenli Wu, Andrew J. Radosevich, Adam Eshein, The-Quyen Nguyen, Ji Yi, Lusik Cherkezyan, Hemant K. Roy, Igal Szleifer, and Vadim Backman

Biomed. Opt. Express 7(11), 4749-4762 (2016)  View: HTML | PDF

Perceived image quality with simulated segmented bifocal corrections

Carlos Dorronsoro, Aiswaryah Radhakrishnan, Pablo de Gracia, Lucie Sawides, and Susana Marcos

Biomed. Opt. Express 7(11), 4388-4399 (2016)  View: HTML | PDF

Quantifying intraocular scatter with near diffraction-limited double-pass point spread function

Junlei Zhao, Fei Xiao, Jian Kang, Haoxin Zhao, Yun Dai, and Yudong Zhang

Biomed. Opt. Express 7(11), 4595-4604 (2016)  View: HTML | PDF

Estimation of Jones matrix, birefringence and entropy using Cloude-Pottier decomposition in polarization-sensitive optical coherence tomography: erratum

Masahiro Yamanari, Satoru Tsuda, Taiki Kokubun, Yukihiro Shiga, Kazuko Omodaka, Naoko Aizawa, Yu Yokoyama, Noriko Himori, Shiho Kunimatsu-Sanuki, Kazuichi Maruyama, Hiroshi Kunikata, and Toru Nakazawa

Biomed. Opt. Express 7(11), 4636-4638 (2016)  View: HTML | PDF

Perceived image quality with simulated segmented bifocal corrections: publisher’s note

Carlos Dorronsoro, Aiswaryah Radhakrishnan, Pablo De Gracia, Lucie Sawides, and Susana Marcos

Biomed. Opt. Express 7(11), 4620-4620 (2016)  View: HTML | PDF