Label-free Gram-negative bacteria detection using bacteriophage-adhesin-coated long-period gratings

Ewa Brzozowska, Marcin Koba, Mateusz Śmietana, Sabina Górska, Monika Janik, Andrzej Gamian, and Wojtek J. Bock

Biomed. Opt. Express 7(3), 829-840 (2016)  View: HTML | PDF

Dynamic filtering improves attentional state prediction with fNIRS

Angela R. Harrivel, Daniel H. Weissman, Douglas C. Noll, Theodore Huppert, and Scott J. Peltier

Biomed. Opt. Express 7(3), 979-1002 (2016)  View: HTML | PDF

In vivo bioluminescence and reflectance imaging of multiple organs in bioluminescence reporter mice by bundled-fiber-coupled microscopy

Yoriko Ando, Takashi Sakurai, Kowa Koida, Hajime Tei, Akiko Hida, Kazuki Nakao, Mistuo Natsume, and Rika Numano

Biomed. Opt. Express 7(3), 963-978 (2016)  View: HTML | PDF

Fast blood flow monitoring in deep tissues with real-time software correlators

Detian Wang, Ashwin B. Parthasarathy, Wesley B. Baker, Kimberly Gannon, Venki Kavuri, Tiffany Ko, Steven Schenkel, Zhe Li, Zeren Li, Michael T. Mullen, John A. Detre, and Arjun G. Yodh

Biomed. Opt. Express 7(3), 776-797 (2016)  View: HTML | PDF

Automatic differentiation of color fundus images containing drusen or exudates using a contextual spatial pyramid approach

Mark J. J. P. van Grinsven, Thomas Theelen, Leonard Witkamp, Job van der Heijden, Johannes P. H. van de Ven, Carel B. Hoyng, Bram van Ginneken, and Clara I. Sánchez

Biomed. Opt. Express 7(3), 709-725 (2016)  View: HTML | PDF

Statistical iterative reconstruction using adaptive fractional order regularization

Yi Zhang, Yan Wang, Weihua Zhang, Feng Lin, Yifei Pu, and Jiliu Zhou

Biomed. Opt. Express 7(3), 1015-1029 (2016)  View: HTML | PDF

PSF engineering in multifocus microscopy for increased depth volumetric imaging

Bassam Hajj, Mohamed El Beheiry, and Maxime Dahan

Biomed. Opt. Express 7(3), 726-731 (2016)  View: HTML | PDF

Tri-modal microscope for head and neck tissue identification

Etienne De Montigny, Nadir Goulamhoussen, Wendy-Julie Madore, Mathias Strupler, Olguta Ecaterina Gologan, Tareck Ayad, and Caroline Boudoux

Biomed. Opt. Express 7(3), 732-745 (2016)  View: HTML | PDF

Structured illumination temporal compressive microscopy

Xin Yuan and Shuo Pang

Biomed. Opt. Express 7(3), 746-758 (2016)  View: HTML | PDF

Multifocus microscopy with precise color multi-phase diffractive optics applied in functional neuronal imaging

Sara Abrahamsson, Rob Ilic, Jan Wisniewski, Brian Mehl, Liya Yu, Lei Chen, Marcelo Davanco, Laura Oudjedi, Jean-Bernard Fiche, Bassam Hajj, Xin Jin, Joan Pulupa, Christine Cho, Mustafa Mir, Mohamed El Beheiry, Xavier Darzacq, Marcelo Nollmann, Maxime Dahan, Carl Wu, Timothée Lionnet, J. Alexander Liddle, and Cornelia I. Bargmann

Biomed. Opt. Express 7(3), 855-869 (2016)  View: HTML | PDF  [Suppl. Mat. (6)]

Lensfree diffractive tomography for the imaging of 3D cell cultures

F. Momey, A. Berdeu, T. Bordy, J.-M. Dinten, F. Kermarrec Marcel, N. Picollet-D’hahan, X. Gidrol, and C. Allier

Biomed. Opt. Express 7(3), 949-962 (2016)  View: HTML | PDF  [Suppl. Mat. (8)]

Nanoscale refractive index fluctuations detected via sparse spectral microscopy

John E. Chandler, Lusik Cherkezyan, Hariharan Subramanian, and Vadim Backman

Biomed. Opt. Express 7(3), 883-893 (2016)  View: HTML | PDF

Endogenous light scattering as an optical signature of circulating tumor cell clusters

Joe Lyons, Michael Polmear, Nora D. Mineva, Mathilde Romagnoli, Gail E. Sonenshein, and Irene Georgakoudi

Biomed. Opt. Express 7(3), 1042-1050 (2016)  View: HTML | PDF

Eye-pupil displacement and prediction: effects on residual wavefront in adaptive optics retinal imaging

Caroline Kulcsár, Henri-François Raynaud, and Aurea Garcia-Rissmann

Biomed. Opt. Express 7(3), 1051-1073 (2016)  View: HTML | PDF

Projection-resolved optical coherence tomographic angiography

Miao Zhang, Thomas S. Hwang, J. Peter Campbell, Steven T. Bailey, David J. Wilson, David Huang, and Yali Jia

Biomed. Opt. Express 7(3), 816-828 (2016)  View: HTML | PDF  [Suppl. Mat. (1)]

Functional optical coherence tomography of rat olfactory bulb with periodic odor stimulation

Hideyuki Watanabe, Uma Maheswari Rajagopalan, Yu Nakamichi, Kei M. Igarashi, Hirofumi Kadono, and Manabu Tanifuji

Biomed. Opt. Express 7(3), 841-854 (2016)  View: HTML | PDF

Automated quantitative assessment of three-dimensional bioprinted hydrogel scaffolds using optical coherence tomography

Ling Wang, Mingen Xu, LieLie Zhang, QingQing Zhou, and Li Luo

Biomed. Opt. Express 7(3), 894-910 (2016)  View: HTML | PDF  [Suppl. Mat. (3)]

Comparison of amplitude-decorrelation, speckle-variance and phase-variance OCT angiography methods for imaging the human retina and choroid

Iwona Gorczynska, Justin V. Migacz, Robert J. Zawadzki, Arlie G. Capps, and John S. Werner

Biomed. Opt. Express 7(3), 911-942 (2016)  View: HTML | PDF  [Suppl. Mat. (3)]

Quantitative monitoring of laser-treated engineered skin using optical coherence tomography

Yujin Ahn, Chan-Young Lee, Songyee Baek, Taeho Kim, Pilun Kim, Sunghoon Lee, Daejin Min, Haekwang Lee, Jeehyun Kim, and Woonggyu Jung

Biomed. Opt. Express 7(3), 1030-1041 (2016)  View: HTML | PDF

Full 3-D OCT-based pseudophakic custom computer eye model

M. Sun, P. Pérez-Merino, E. Martinez-Enriquez, M. Velasco-Ocana, and S. Marcos

Biomed. Opt. Express 7(3), 1074-1088 (2016)  View: HTML | PDF

Optically trapping tumor cells to assess differentiation and prognosis of cancers

M. Pradhan, S. Pathak, D. Mathur, and U. Ladiwala

Biomed. Opt. Express 7(3), 943-948 (2016)  View: HTML | PDF  [Suppl. Mat. (2)]

Sensitivity of laser speckle contrast imaging to flow perturbations in the cortex

Mitchell A. Davis, Louis Gagnon, David A. Boas, and Andrew K. Dunn

Biomed. Opt. Express 7(3), 759-775 (2016)  View: HTML | PDF

Simulation of speckle patterns with pre-defined correlation distributions

Lipei Song, Zhen Zhou, Xueyan Wang, Xing Zhao, and Daniel S. Elson

Biomed. Opt. Express 7(3), 798-809 (2016)  View: HTML | PDF

Real-time simultaneous single snapshot of optical properties and blood flow using coherent spatial frequency domain imaging (cSFDI)

Michael Ghijsen, Bernard Choi, Anthony J. Durkin, Sylvain Gioux, and Bruce J. Tromberg

Biomed. Opt. Express 7(3), 870-882 (2016)  View: HTML | PDF

Optical configuration of pigmented lesion detection by frequency analysis of skin speckle patterns

Yael Bishitz, Nisan Ozana, Ariel Schwarz, Yevgeny Beiderman, Javier Garcia, and Zeev Zalevsky

Biomed. Opt. Express 7(3), 1003-1014 (2016)  View: HTML | PDF

In vivo Raman measurement of levofloxacin lactate in blood using a nanoparticle-coated optical fiber probe

Shupeng Liu, Ming Rong, Heng Zhang, Na Chen, Fufei Pang, Zhenyi Chen, Tingyun Wang, and Jianshe Yan

Biomed. Opt. Express 7(3), 810-815 (2016)  View: HTML | PDF