The Top Cited Articles in Biomedical Optics Express

Biomedical Optics Express has delivered must-read research results to the biomedical optics community since its first issue published in August 2010. In recognition of the Journal's 10th Anniversary, we have curated 100 top-cited research articles from ten important topic categories. Consideration was given to average citations per year, in addition to total citations, so that more recent articles are also included. Biomedical Optics Express has published a number of highly valued Review papers, yet this list highlights research articles only.

Biomedical Optics Express publishes technological advances involving hardware and software across the breadth of its content scope and we made efforts to ensure both aspects are well-represented in this listing.

Biomedical Optical Devices ⇡

• High-resolution, lensless endoscope based on digital scanning through a multimode optical fiber
  Ioannis N. Papadopoulos, Salma Farahi, Christophe Moser, and Demetri Psaltis
  Biomed. Opt. Express 4(2) 260-270 (2013)
• In vivo imaging of unstained tissues using long gradient index lens multiphoton endoscopic systems
  David M. Huland, Christopher M. Brown, Scott S. Howard, Dimitre G. Ouzounov, Ina Pavlova, Ke Wang, David R. Rivera, Watt W. Webb, and Chris Xu
  Biomed. Opt. Express 3(5) 1077-1085 (2012)
• High-speed, image-based eye tracking with a scanning laser ophthalmoscope
  Christy K. Sheehy, Qiang Yang, David W. Arathorn, Pavan Tiruveedhula, Johannes F. de Boer, and Austin Roorda
  Biomed. Opt. Express 3(10) 2611-2622 (2012)
• Miniature fiber-optic force sensor based on low-coherence Fabry-Pérot interferometry for vitreoretinal microsurgery
  Xuan Liu, Iulian I. Iordachita, Xingchi He, Russell H. Taylor, and Jin U. Kang
  Biomed. Opt. Express 3(5) 1062-1076 (2012)
• Fabricating low cost and high performance elastomer lenses using hanging droplets
  W. M. Lee, A. Upadhya, P. J. Reece, and Tri Giang Phan
  Biomed. Opt. Express 5(5) 1626-1635 (2014)
• Broadband miniature optical ultrasound probe for high resolution vascular tissue imaging
  Richard J. Colchester, Edward Z. Zhang, Charles A. Mosse, Paul C. Beard, Ioannis Papakonstantinou, and Adrien E. Desjardins
  Biomed. Opt. Express 6(4) 1502-1511 (2015)
• Diffuse reflectance spectroscopy of epithelial tissue with a smart fiber-optic probe
  Bing Yu, Amy Shah, Vivek K. Nagarajan, and Daron G. Ferris
  Biomed. Opt. Express 5(3) 675-689 (2014)
• Handheld imaging photonic crystal biosensor for multiplexed, label-free protein detection
  Sabrina Jahns, Marion Bräu, Björn-Ole Meyer, Torben Karrock, Sören B. Gutekunst, Lars Blohm, Christine Selhuber-Unkel, Raymund Buhmann, Yousef Nazirizadeh, and Martina Gerken
  Biomed. Opt. Express 6(10) 3724-3736 (2015)
• Extreme sensitive metasensor for targeted biomarkers identification using colloidal nanoparticles-integrated plasmonic unit cells
  Arash Ahmadivand, Burak Gerislioglu, Asahi Tomitaka, Pandiaraj Manickam, Ajeet Kaushik, Shekhar Bhansali, Madhavan Nair, and Nezih Pala
  Biomed. Opt. Express 9(2) 373-386 (2018)
• Enhancement of accuracy in shape sensing of surgical needles using optical frequency domain reflectometry in optical fibers
  Francois Parent, Sebastien Loranger, Koushik Kanti Mandal, Victor Lambin Iezzi, Jerome Lapointe, Jean-Sébastien Boisvert, Mohamed Diaa Baiad, Samuel Kadoury, and Raman Kashyap
  Biomed. Opt. Express 8(4) 2210-2221 (2017)

Microscopy ⇡

• Multiplexed coded illumination for Fourier Ptychography with an LED array microscope
  Lei Tian, Xiao Li, Kannan Ramchandran, and Laura Waller
  Biomed. Opt. Express 5(7) 2376-2389 (2014)
• Simultaneous multiple-emitter fitting for single molecule super-resolution imaging
  Fang Huang, Samantha L. Schwartz, Jason M. Byars, and Keith A. Lidke
  Biomed. Opt. Express 2(5) 1377-1393 (2011)
• Fast two-layer two-photon imaging of neuronal cell populations using an electrically tunable lens
  Benjamin F. Grewe, Fabian F. Voigt, Marcel van ’t Hoff, and Fritjof Helmchen
  Biomed. Opt. Express 2(7) 2035-2046 (2011)
• Generalized cell morphological parameters based on interferometric phase microscopy and their application to cell life cycle characterization
  Pinhas Girshovitz and Natan T. Shaked
  Biomed. Opt. Express 3(8) 1757-1773 (2012)
• Spectral multiplexing and coherent-state decomposition in Fourier ptychographic imaging
  Siyuan Dong, Radhika Shiradkar, Pariksheet Nanda, and Guoan Zheng
  Biomed. Opt. Express 5(6) 1757-1767 (2014)
• Re-scan confocal microscopy: scanning twice for better resolution
  Giulia M.R. De Luca, Ronald M.P. Breedijk, Rick A.J. Brandt, Christiaan H.C. Zeelenberg, Babette E. de Jong, Wendy Timmermans, Leila Nahidi Azar, Ron A. Hoebe, Sjoerd Stallinga, and Erik M.M. Manders
  Biomed. Opt. Express 4(11) 2644-2656 (2013)
• Label-free characterization of white blood cells by measuring 3D refractive index maps
  Jonghee Yoon, Kyoohyun Kim, HyunJoo Park, Chulhee Choi, Seongsoo Jang, and YongKeun Park
  Biomed. Opt. Express 6(10) 3865-3875 (2015)
• Measurements of multiphoton action cross sections for multiphoton microscopy
  Li-Chung Cheng, Nicholas G. Horton, Ke Wang, Shean-Jen Chen, and Chris Xu
  Biomed. Opt. Express 5(10) 3427-3433 (2014)
• A high speed multifocal multiphoton fluorescence lifetime imaging microscope for live-cell FRET imaging
  Simon P. Poland, Nikola Krstajić, James Monypenny, Simao Coelho, David Tyndall, Richard J. Walker, Viviane Devauges, Justin Richardson, Neale Dutton, Paul Barber, David Day-Uei Li, Klaus Suhling, Tony Ng, Robert K. Henderson, and Simon M. Ameer-Beg
  Biomed. Opt. Express 6(2) 277-296 (2015)
• Efficient positional misalignment correction method for Fourier ptychographic microscopy
  Jiasong Sun, Qian Chen, Yuzhen Zhang, and Chao Zuo
  Biomed. Opt. Express 7(4) 1336-1350 (2016)

Modelling and Image Processing ⇡

• Mesh-based Monte Carlo method using fast ray-tracing in Plücker coordinates
  Qianqian Fang
  Biomed. Opt. Express 1(1) 165-175 (2010)
• Low-dose CT via convolutional neural network
  Hu Chen, Yi Zhang, Weihua Zhang, Peixi Liao, Ke Li, Jiliu Zhou, and Ge Wang
  Biomed. Opt. Express 8(2) 679-694 (2017)
• Retinal layer segmentation of macular OCT images using boundary classification
  Andrew Lang, Aaron Carass, Matthew Hauser, Elias S. Sotirchos, Peter A. Calabresi, Howard S. Ying, and Jerry L. Prince
  Biomed. Opt. Express 4(7) 1133-1152 (2013)
• Next-generation acceleration and code optimization for light transport in turbid media using GPUs
  Erik Alerstam, William Chun Yip Lo, Tianyi David Han, Jonathan Rose, Stefan Andersson-Engels, and Lothar Lilge
  Biomed. Opt. Express 1(2) 658-675 (2010)
• Fully automated detection of diabetic macular edema and dry age-related macular degeneration from optical coherence tomography images
  Pratul P. Srinivasan, Leo A. Kim, Priyatham S. Mettu, Scott W. Cousins, Grant M. Comer, Joseph A. Izatt, and Sina Farsiu
  Biomed. Opt. Express 5(10) 3568-3577 (2014)
• Quantitative 3D-OCT motion correction with tilt and illumination correction, robust similarity measure and regularization
  Martin F. Kraus, Jonathan J. Liu, Julia Schottenhamml, Chieh-Li Chen, Attila Budai, Lauren Branchini, Tony Ko, Hiroshi Ishikawa, Gadi Wollstein, Joel Schuman, Jay S. Duker, James G. Fujimoto, and Joachim Hornegger
  Biomed. Opt. Express 5(8) 2591-2613 (2014)
• Online object oriented Monte Carlo computational tool for the needs of biomedical optics
  Alexander Doronin and Igor Meglinski
  Biomed. Opt. Express 2(9) 2461-2469 (2011)
• Kernel regression based segmentation of optical coherence tomography images with diabetic macular edema
  Stephanie J. Chiu, Michael J. Allingham, Priyatham S. Mettu, Scott W. Cousins, Joseph A. Izatt, and Sina Farsiu
  Biomed. Opt. Express 6(4) 1172-1194 (2015)
• Advanced image processing for optical coherence tomographic angiography of macular diseases
  Miao Zhang, Jie Wang, Alex D. Pechauer, Thomas S. Hwang, Simon S. Gao, Liang Liu, Li Liu, Steven T. Bailey, David J. Wilson, David Huang, and Yali Jia
  Biomed. Opt. Express 6(12) 4661-4675 (2015)
• Autoregressive model based algorithm for correcting motion and serially correlated errors in fNIRS
  Jeffrey W. Barker, Ardalan Aarabi, and Theodore J. Huppert
  Biomed. Opt. Express 4(8) 1366-1379 (2013)

Multimodal and Other Imaging Techniques ⇡

• Multimodal photoacoustic and optical coherence tomography scanner using an all optical detection scheme for 3D morphological skin imaging
  Edward Z. Zhang, Boris Povazay, Jan Laufer, Aneesh Alex, Bernd Hofer, Barbara Pedley, Carl Glittenberg, Bradley Treeby, Ben Cox, Paul Beard, and Wolfgang Drexler
  Biomed. Opt. Express 2(8) 2202-2215 (2011)
• Integrated optical coherence tomography, ultrasound and photoacoustic imaging for ovarian tissue characterization
  Yi Yang, Xiang Li, Tianheng Wang, Patrick D. Kumavor, Andres Aguirre, Kirk K. Shung, Qifa Zhou, Melinda Sanders, Molly Brewer, and Quing Zhu
  Biomed. Opt. Express 2(9) 2551-2561 (2011)
• Integrated adaptive optics optical coherence tomography and adaptive optics scanning laser ophthalmoscope system for simultaneous cellular resolution in vivo retinal imaging
  Robert J. Zawadzki, Steven M. Jones, Suman Pilli, Sandra Balderas-Mata, Dae Yu Kim, Scot S. Olivier, and John S. Werner
  Biomed. Opt. Express 2(6) 1674-1686 (2011)
• Combined photoacoustic microscopy and optical coherence tomography can measure metabolic rate of oxygen
  Tan Liu, Qing Wei, Jing Wang, Shuliang Jiao, and Hao F. Zhang
  Biomed. Opt. Express 2(5) 1359-1365 (2011)
• Quantitative assessment of graded burn wounds in a porcine model using spatial frequency domain imaging (SFDI) and laser speckle imaging (LSI)
  Adrien Ponticorvo, David M. Burmeister, Bruce Yang, Bernard Choi, Robert J. Christy, and Anthony J. Durkin
  Biomed. Opt. Express 5(10) 3467-3481 (2014)
• Multi-modal approach using Raman spectroscopy and optical coherence tomography for the discrimination of colonic adenocarcinoma from normal colon
  Praveen C. Ashok, Bavishna B. Praveen, Nicola Bellini, Andrew Riches, Kishan Dholakia, and C. Simon Herrington
  Biomed. Opt. Express 4(10) 2179-2186 (2013)
• In vivo dual-modality photoacoustic and optical coherence tomography imaging of human dermatological pathologies
  Behrooz Zabihian, Jessika Weingast, Mengyang Liu, Edward Zhang, Paul Beard, Hubert Pehamberger, Wolfgang Drexler, and Boris Hermann
  Biomed. Opt. Express 6(9) 3163-3178 (2015)
• Multimodal in vivo imaging of oral cancer using fluorescence lifetime, photoacoustic and ultrasound techniques
  Hussain Fatakdawala, Shannon Poti, Feifei Zhou, Yang Sun, Julien Bec, Jing Liu, Diego R. Yankelevich, Steven P. Tinling, Regina F. Gandour-Edwards, D. Gregory Farwell, and Laura Marcu
  Biomed. Opt. Express 4(9) 1724-1741 (2013)
• Adaptive-optics SLO imaging combined with widefield OCT and SLO enables precise 3D localization of fluorescent cells in the mouse retina
  Robert J. Zawadzki, Pengfei Zhang, Azhar Zam, Eric B. Miller, Mayank Goswami, Xinlei Wang, Ravi S. Jonnal, Sang-Hyuck Lee, Dae Yu Kim, John G. Flannery, John S. Werner, Marie E. Burns, and Edward N. Pugh
  Biomed. Opt. Express 6(6) 2191-2210 (2015)
• Multimodal non-linear optical imaging for label-free differentiation of lung cancerous lesions from normal and desmoplastic tissues
  Xiaoyun Xu, Jie Cheng, Michael J. Thrall, Zhengfan Liu, Xi Wang, and Stephen T.C. Wong
  Biomed. Opt. Express 4(12) 2855-2868 (2013)

Near Infrared Spectroscopy and Imaging ⇡

• Magnetoencephalography with a chip-scale atomic magnetometer
  T. H. Sander, J. Preusser, R. Mhaskar, J. Kitching, L. Trahms, and S. Knappe
  Biomed. Opt. Express 3(5) 981-990 (2012)
• Resting state functional connectivity of the whole head with near-infrared spectroscopy
  Rickson C. Mesquita, Maria A. Franceschini, and David A. Boas
  Biomed. Opt. Express 1(1) 324-336 (2010)
• Passive BCI based on drowsiness detection: an fNIRS study
  M. Jawad Khan and Keum-Shik Hong
  Biomed. Opt. Express 6(10) 4063-4078 (2015)
• Characterizing the microstructures of biological tissues using Mueller matrix and transformed polarization parameters
  Minghao Sun, Honghui He, Nan Zeng, E Du, Yihong Guo, Shaoxiong Liu, Jian Wu, Yonghong He, and Hui Ma
  Biomed. Opt. Express 5(12) 4223-4234 (2014)
• Determination of reference values for optical properties of liquid phantoms based on Intralipid and India ink
  L. Spinelli, M. Botwicz, N. Zolek, M. Kacprzak, D. Milej, P. Sawosz, A. Liebert, U. Weigel, T. Durduran, F. Foschum, A. Kienle, F. Baribeau, S. Leclair, J.-P. Bouchard, I. Noiseux, P. Gallant, O. Mermut, A. Farina, A. Pifferi, A. Torricelli, R. Cubeddu, H.-C. Ho, M. Mazurenka, H. Wabnitz, K. Klauenberg, O. Bodnar, C. Elster, M. Bénazech-Lavoué, Y. Bérubé-Lauzière, F. Lesage, D. Khoptyar, A. A. Subash, S. Andersson-Engels, P. Di Ninni, F. Martelli, and G. Zaccanti
  Biomed. Opt. Express 5(7) 2037-2053 (2014)
• State-space models of impulse hemodynamic responses over motor, somatosensory, and visual cortices
  Keum-Shik Hong and Hoang-Dung Nguyen
  Biomed. Opt. Express 5(6) 1778-1798 (2014)
• Sub-diffusive scattering parameter maps recovered using wide-field high-frequency structured light imaging
  Stephen Chad Kanick, David M. McClatchy, Venkataramanan Krishnaswamy, Jonathan T. Elliott, Keith D. Paulsen, and Brian W. Pogue
  Biomed. Opt. Express 5(10) 3376-3390 (2014)
• Towards next-generation time-domain diffuse optics for extreme depth penetration and sensitivity
  Alberto Dalla Mora, Davide Contini, Simon Arridge, Fabrizio Martelli, Alberto Tosi, Gianluca Boso, Andrea Farina, Turgut Durduran, Edoardo Martinenghi, Alessandro Torricelli, and Antonio Pifferi
  Biomed. Opt. Express 6(5) 1749-1760 (2015)
• Detection and classification of three-class initial dips from prefrontal cortex
  Amad Zafar and Keum-Shik Hong
  Biomed. Opt. Express 8(1) 367-383 (2017)
• Bundled-optode implementation for 3D imaging in functional near-infrared spectroscopy
  Hoang-Dung Nguyen and Keum-Shik Hong
  Biomed. Opt. Express 7(9) 3491-3507 (2016)

Optical Coherence Tomography ⇡

• Motion correction in optical coherence tomography volumes on a per A-scan basis using orthogonal scan patterns
  Martin F. Kraus, Benjamin Potsaid, Markus A. Mayer, Ruediger Bock, Bernhard Baumann, Jonathan J. Liu, Joachim Hornegger, and James G. Fujimoto
  Biomed. Opt. Express 3(6) 1182-1199 (2012)
• Retinal, anterior segment and full eye imaging using ultrahigh speed swept source OCT with vertical-cavity surface emitting lasers
  Ireneusz Grulkowski, Jonathan J. Liu, Benjamin Potsaid, Vijaysekhar Jayaraman, Chen D. Lu, James Jiang, Alex E. Cable, Jay S. Duker, and James G. Fujimoto
  Biomed. Opt. Express 3(11) 2733-2751 (2012)
• Projection-resolved optical coherence tomographic angiography
  Miao Zhang, Thomas S. Hwang, J. Peter Campbell, Steven T. Bailey, David J. Wilson, David Huang, and Yali Jia
  Biomed. Opt. Express 7(3) 816-828 (2016)
• Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search
  Leyuan Fang, David Cunefare, Chong Wang, Robyn H. Guymer, Shutao Li, and Sina Farsiu
  Biomed. Opt. Express 8(5) 2732-2744 (2017)
• Multi-MHz retinal OCT
  Thomas Klein, Wolfgang Wieser, Lukas Reznicek, Aljoscha Neubauer, Anselm Kampik, and Robert Huber
  Biomed. Opt. Express 4(10) 1890-1908 (2013)
• Handheld ultrahigh speed swept source optical coherence tomography instrument using a MEMS scanning mirror
  Chen D. Lu, Martin F. Kraus, Benjamin Potsaid, Jonathan J. Liu, WooJhon Choi, Vijaysekhar Jayaraman, Alex E. Cable, Joachim Hornegger, Jay S. Duker, and James G. Fujimoto
  Biomed. Opt. Express 5(1) 293-311 (2014)
• High definition live 3D-OCT in vivo: design and evaluation of a 4D OCT engine with 1 GVoxel/s
  Wolfgang Wieser, Wolfgang Draxinger, Thomas Klein, Sebastian Karpf, Tom Pfeiffer, and Robert Huber
  Biomed. Opt. Express 5(9) 2963-2977 (2014)
• ReLayNet: retinal layer and fluid segmentation of macular optical coherence tomography using fully convolutional networks
  Abhijit Guha Roy, Sailesh Conjeti, Sri Phani Krishna Karri, Debdoot Sheet, Amin Katouzian, Christian Wachinger, and Nassir Navab
  Biomed. Opt. Express 8(8) 3627-3642 (2017)
• Transfer learning based classification of optical coherence tomography images with diabetic macular edema and dry age-related macular degeneration
  S. P. K. Karri, Debjani Chakraborty, and Jyotirmoy Chatterjee
  Biomed. Opt. Express 8(2) 579-592 (2017)
• Deep-learning based, automated segmentation of macular edema in optical coherence tomography
  Cecilia S. Lee, Ariel J. Tyring, Nicolaas P. Deruyter, Yue Wu, Ariel Rokem, and Aaron Y. Lee
  Biomed. Opt. Express 8(7) 3440-3448 (2017)

Optical Diagnostics ⇡

• Quantitative OCT angiography of optic nerve head blood flow
  Yali Jia, John C. Morrison, Jason Tokayer, Ou Tan, Lorinna Lombardi, Bernhard Baumann, Chen D. Lu, WooJhon Choi, James G. Fujimoto, and David Huang
  Biomed. Opt. Express 3(12) 3127-3137 (2012)
• DistancePPG: Robust non-contact vital signs monitoring using a camera
  Mayank Kumar, Ashok Veeraraghavan, and Ashutosh Sabharwal
  Biomed. Opt. Express 6(5) 1565-1588 (2015)
• A reflection-based localized surface plasmon resonance fiber-optic probe for biochemical sensing
  Yongbin Lin, Yang Zou, and Robert G. Lindquist
  Biomed. Opt. Express 2(3) 478-484 (2011)
• Study of freshly excised brain tissues using terahertz imaging
  Seung Jae Oh, Sang-Hoon Kim, Young Bin Ji, Kiyoung Jeong, Yeonji Park, Jaemoon Yang, Dong Woo Park, Sam Kyu Noh, Seok-Gu Kang, Yong-Min Huh, Joo-Hiuk Son, and Jin-Suck Suh
  Biomed. Opt. Express 5(8) 2837-2842 (2014)
• Smartphone instrument for portable enzyme- linked immunosorbent assays
  Kenneth D. Long, Hojeong Yu, and Brian T. Cunningham
  Biomed. Opt. Express 5(11) 3792-3806 (2014)
• Modified Beer-Lambert law for blood flow
  Wesley B. Baker, Ashwin B. Parthasarathy, David R. Busch, Rickson C. Mesquita, Joel H. Greenberg, and A. G. Yodh
  Biomed. Opt. Express 5(11) 4053-4075 (2014)
• Noninvasive in vivo glucose sensing on human subjects using mid-infrared light
  Sabbir Liakat, Kevin A. Bors, Laura Xu, Callie M. Woods, Jessica Doyle, and Claire F. Gmachl
  Biomed. Opt. Express 5(7) 2397-2404 (2014)
• Characterization of a Raman spectroscopy probe system for intraoperative brain tissue classification
  Joannie Desroches, Michael Jermyn, Kelvin Mok, Cédric Lemieux-Leduc, Jeanne Mercier, Karl St-Arnaud, Kirk Urmey, Marie-Christine Guiot, Eric Marple, Kevin Petrecca, and Frédéric Leblond
  Biomed. Opt. Express 6(7) 2380-2397 (2015)
• Fluorescence properties of several chemotherapy drugs: doxorubicin, paclitaxel and bleomycin
  Najme Sadat Hosseini Motlagh, Parviz Parvin, Fatemah Ghasemi, and Fatemeh Atyabi
  Biomed. Opt. Express 7(6) 2400-2406 (2016)
• Optical blood pressure estimation with photoplethysmography and FFT-based neural networks
  Xiaoman Xing and Mingshan Sun
  Biomed. Opt. Express 7(8) 3007-3020 (2016)

Optical Therapies ⇡

• Optical vortices generated by a PANDA ring resonator for drug trapping and delivery applications
  Nathaporn Suwanpayak, Muhammad Arif Jalil, Chat Teeka, Jalil Ali, and Preecha P. Yupapin
  Biomed. Opt. Express 2(1) 159-168 (2011)
• Quantitative comparison of optimized nanorods, nanoshells and hollow nanospheres for photothermal therapy
  Sameh Kessentini and Dominique Barchiesi
  Biomed. Opt. Express 3(3) 590-604 (2012)
• Flexible delivery of Er:YAG radiation at 2.94 µm with negative curvature silica glass fibers: a new solution for minimally invasive surgical procedures
  A. Urich, R. R. J. Maier, Fei Yu, J. C. Knight, D. P. Hand, and J. D. Shephard
  Biomed. Opt. Express 4(2) 193-205 (2013)
• Simultaneous spatial and temporal focusing for tissue ablation
  Erica Block, Michael Greco, Dawn Vitek, Omid Masihzadeh, David A. Ammar, Malik Y. Kahook, Naresh Mandava, Charles Durfee, and Jeff Squier
  Biomed. Opt. Express 4(6) 831-841 (2013)
• Nanosecond laser pulse stimulation of the inner ear—a wavelength study
  Michael Schultz, Peter Baumhoff, Hannes Maier, Ingo U. Teudt, Alexander Krüger, Thomas Lenarz, and Andrej Kral
  Biomed. Opt. Express 3(12) 3332-3345 (2012)
• Monitoring blood flow responses during topical ALA-PDT
  Theresa L. Becker, Anne D. Paquette, Kenneth R. Keymel, Barbara W. Henderson, and Ulas Sunar
  Biomed. Opt. Express 2(1) 123-130 (2011)
• Photodynamic opening of blood-brain barrier
  Oxana Semyachkina-Glushkovskaya, Jürgen Kurths, Ekaterina Borisova, Sergei Sokolovski, Vanya Mantareva, Ivan Angelov, Alexander Shirokov, Nikita Navolokin, Natalia Shushunova, Alexander Khorovodov, Maria Ulanova, Madina Sagatova, Ilana Agranivich, Olga Sindeeva, Artem Gekalyuk, Anastasiya Bodrova, and Edik Rafailov
  Biomed. Opt. Express 8(11) 5040-5048 (2017)
• Manipulating the mitochondria activity in human hepatic cell line Huh7 by low-power laser irradiation
  Anna Lynnyk, Mariia Lunova, Milan Jirsa, Daria Egorova, Andrei Kulikov, Šárka Kubinová, Oleg Lunov, and Alexandr Dejneka
  Biomed. Opt. Express 9(3) 1283-1300 (2018)
• Automatic interstitial photodynamic therapy planning via convex optimization
  Abdul-Amir Yassine, William Kingsford, Yiwen Xu, Jeffrey Cassidy, Lothar Lilge, and Vaughn Betz
  Biomed. Opt. Express 9(2) 898-920 (2018)
• Photodynamic opening of the blood-brain barrier to high weight molecules and liposomes through an optical clearing skull window
  Chao Zhang, Wei Feng, Elena Vodovozova, Daria Tretiakova, Ivan Boldyrevd, Yusha Li, Jurgen Kürths, Tingting Yu, Oxana Semyachkina-Glushkovskaya, and Dan Zhu
  Biomed. Opt. Express 9(10) 4850-4862 (2018)

Other Optical Technologies ⇡

• Noninvasive imaging of the human rod photoreceptor mosaic using a confocal adaptive optics scanning ophthalmoscope
  Alfredo Dubra, Yusufu Sulai, Jennifer L. Norris, Robert F. Cooper, Adam M. Dubis, David R. Williams, and Joseph Carroll
  Biomed. Opt. Express 2(7) 1864-1876 (2011)
• Reflective afocal broadband adaptive optics scanning ophthalmoscope
  Alfredo Dubra and Yusufu Sulai
  Biomed. Opt. Express 2(6) 1757-1768 (2011)
• The use of forward scatter to improve retinal vascular imaging with an adaptive optics scanning laser ophthalmoscope
  Toco Y. P. Chui, Dean A. VanNasdale, and Stephen A. Burns
  Biomed. Opt. Express 3(10) 2537-2549 (2012)
• Observation of cone and rod photoreceptors in normal subjects and patients using a new generation adaptive optics scanning laser ophthalmoscope
  David Merino, Jacque L. Duncan, Pavan Tiruveedhula, and Austin Roorda
  Biomed. Opt. Express 2(8) 2189-2201 (2011)
• Fabrication of microscale medical devices by two-photon polymerization with multiple foci via a spatial light modulator
  Shaun D. Gittard, Alexander Nguyen, Kotaro Obata, Anastasia Koroleva, Roger J. Narayan, and Boris N. Chichkov
  Biomed. Opt. Express 2(11) 3167-3178 (2011)
• Silica-coated super paramagnetic iron oxide nanoparticles (SPION) as biocompatible contrast agent in biomedical photoacoustics
  Rudolf Alwi, Sergey Telenkov, Andreas Mandelis, Timothy Leshuk, Frank Gu, Sulayman Oladepo, and Kirk Michaelian
  Biomed. Opt. Express 3(10) 2500-2509 (2012)
• In vivo adaptive optics microvascular imaging in diabetic patients without clinically severe diabetic retinopathy
  Stephen A. Burns, Ann E. Elsner, Toco Y. Chui, Dean A. VanNasdale, Christopher A. Clark, Thomas J Gast, Victor E. Malinovsky, and Anh-Danh T. Phan
  Biomed. Opt. Express 5(3) 961-974 (2014)
• In vivo imaging of cerebral energy metabolism with two-photon fluorescence lifetime microscopy of NADH
  Mohammad A. Yaseen, Sava Sakadžić, Weicheng Wu, Wolfgang Becker, Karl A. Kasischke, and David A. Boas
  Biomed. Opt. Express 4(2) 307-321 (2013)
• Red emissive AIE nanodots with high two-photon absorption efficiency at 1040 nm for deep-tissue in vivo imaging
  Yalun Wang, Rongrong Hu, Wang Xi, Fuhong Cai, Shaowei Wang, Zhenfeng Zhu, Rongpan Bai, and Jun Qian
  Biomed. Opt. Express 6(10) 3783-3794 (2015)
• In vivo multiplexed molecular imaging of esophageal cancer via spectral endoscopy of topically applied SERS nanoparticles
  Yu Winston Wang, Soyoung Kang, Altaz Khan, Philip Q. Bao, and Jonathan T.C. Liu
  Biomed. Opt. Express 6(10) 3714-3723 (2015)

Photoacoustic Imaging and Spectroscopy ⇡

• Deeply penetrating in vivo photoacoustic imaging using a clinical ultrasound array system
  Chulhong Kim, Todd N. Erpelding, Ladislav Jankovic, Michael D. Pashley, and Lihong V. Wang
  Biomed. Opt. Express 1(1) 278-284 (2010)
• Tissue-mimicking phantoms for photoacoustic and ultrasonic imaging
  Jason R. Cook, Richard R. Bouchard, and Stanislav Y. Emelianov
  Biomed. Opt. Express 2(11) 3193-3206 (2011)
• Vaporization of perfluorocarbon droplets using optical irradiation
  Eric Strohm, Min Rui, Ivan Gorelikov, Naomi Matsuura, and Michael Kolios
  Biomed. Opt. Express 2(6) 1432-1442 (2011)
• Performance characterization of low-cost, high-speed, portable pulsed laser diode photoacoustic tomography (PLD-PAT) system
  Paul Kumar Upputuri and Manojit Pramanik
  Biomed. Opt. Express 6(10) 4118-4129 (2015)
• Non-contact photoacoustic tomography and ultrasonography for tissue imaging
  Guy Rousseau, Alain Blouin, and Jean-Pierre Monchalin
  Biomed. Opt. Express 3(1) 16-25 (2012)
• Assessing breast tumor margin by multispectral photoacoustic tomography
  Rui Li, Pu Wang, Lu Lan, Frank P. Lloyd, Craig J. Goergen, Shaoxiong Chen, and Ji-Xin Cheng
  Biomed. Opt. Express 6(4) 1273-1281 (2015)
• High frame rate photoacoustic imaging at 7000 frames per second using clinical ultrasound system
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