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Keyframe-aided resolution enhancement network for dynamic super-resolution structured illumination microscopy

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Abstract

Deep learning has been used to reconstruct super-resolution structured illumination microscopy (SR-SIM) images with wide-field or fewer raw images, effectively reducing photobleaching and phototoxicity. However, the dependability of new structures or sample observation is still questioned using these methods. Here, we propose a dynamic SIM imaging strategy: the full raw images are recorded at the beginning to reconstruct the SR image as a keyframe, then only wide-field images are recorded. A deep-learning-based reconstruction algorithm, named KFA-RET, is developed to reconstruct the rest of the SR images for the whole dynamic process. With the structure at the keyframe as a reference and the temporal continuity of biological structures, KFA-RET greatly enhances the quality of reconstructed SR images while reducing photobleaching and phototoxicity. Moreover, KFA-RET has a strong transfer capability for observing new structures that were not included during network training.

© 2023 Optica Publishing Group

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Supplementary Material (8)

NameDescription
Supplement 1       revised supplemental document
Visualization 1       Video file of Fig. 2(b).
Visualization 2       Dynamic structures of microfilament reconstructed via KFA-RET. Video file of Fig. 1(c).
Visualization 3       Dynamic structures of microfilament reconstructed via WF-RET. Video file of Fig. 2(d).
Visualization 4       Dynamic imaging of vesicles via KFA-RET trained with microfilament dataset. Video file of Fig. 4.
Visualization 5       Video file of Fig. S1(b).
Visualization 6       Dynamic imaging of microfilaments via KFA-RET. Video file of Fig. S1(c).
Visualization 7       Dynamic imaging of mitochondria via KFA-RET. Video file of Fig. S2.

Data availability

All data included in this study are available upon request by contact with the corresponding author.

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