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Snapshot temporal compressive light-sheet fluorescence microscopy via deep denoising and total variation priors

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Abstract

We present a snapshot temporal compressive light-sheet fluorescence microscopy system to capture high-speed microscopic scenes with a low-speed camera. A deep denoising network and total variation denoiser are incorporated into a plug-and-play framework to quickly reconstruct 20 high-speed video frames from a short-time measurement. Specifically, we can observe 1,000-frames-per-second (fps) microscopic scenes when the camera works at 50 fps to capture the measurement. The proposed method can potentially be applied to observe cell and tissue motions in thick living biological specimens.

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Supplementary Material (6)

NameDescription
Visualization 1       20 reconstructed frames from the single-shot measurement with each one corresponding to the duration of 1 millisecond for the heart motions of zebrafish.
Visualization 2       Reconstruction results with 20 frames of zebrafish heart from a snapshot measurement.
Visualization 3       Reconstruction results with 20 frames of zebrafish heart from a snapshot measurement.
Visualization 4       Quantitative simulation comparison.
Visualization 5       Quantitative simulation comparison about the robustness of proposed method.
Visualization 6       Four groups of experimental data comparison about the robustness of proposed method.

Data availability

Data underlying the results presented in this paper are not publicly available at this time, but may be obtained from the authors upon reasonable request.

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