Diatom biosilica in plasmonics: applications in sensing, diagnostics and therapeutics [Invited]

Edoardo De Tommasi and Anna Chiara De Luca

Biomed. Opt. Express 13(5), 3080-3101 (2022)  View: HTML | PDF

Optical-force-controlled red-blood-cell microlenses for subwavelength trapping and imaging

Xixi Chen, Heng Li, Tianli Wu, Zhiyong Gong, Jinghui Guo, Yuchao Li, Baojun Li, Pietro Ferraro, and Yao Zhang

Biomed. Opt. Express 13(5), 2995-3004 (2022)  View: HTML | PDF

Joint estimation of depth and motion from a monocular endoscopy image sequence using a multi-loss rebalancing network

Shiyuan Liu, Jingfan Fan, Dengpan Song, Tianyu Fu, Yucong Lin, Deqiang Xiao, Hong Song, Yongtian Wang, and Jian Yang

Biomed. Opt. Express 13(5), 2707-2727 (2022)  View: HTML | PDF

Improving foveal avascular zone segmentation in fluorescein angiograms by leveraging manual vessel labels from public color fundus pictures

Dominik Hofer, Ursula Schmidt-Erfurth, José Ignacio Orlando, Felix Goldbach, Bianca S. Gerendas, and Philipp Seeböck

Biomed. Opt. Express 13(5), 2566-2580 (2022)  View: HTML | PDF

Feasibility of the soft attention-based models for automatic segmentation of OCT kidney images

Mousa Moradi, Xian Du, Tianxiao Huan, and Yu Chen

Biomed. Opt. Express 13(5), 2728-2738 (2022)  View: HTML | PDF

Automated segmentation of the ciliary muscle in OCT images using fully convolutional networks

Iulen Cabeza-Gil, Marco Ruggeri, Yu-Cherng Chang, Begoña Calvo, and Fabrice Manns

Biomed. Opt. Express 13(5), 2810-2823 (2022)  View: HTML | PDF  [Suppl. Mat. (5)]

Dual-consistency semi-supervision combined with self-supervision for vessel segmentation in retinal OCTA images

Zailiang Chen, Yuchen Xiong, Hao Wei, Rongchang Zhao, Xuanchu Duan, and Hailan Shen

Biomed. Opt. Express 13(5), 2824-2834 (2022)  View: HTML | PDF

Optimized U-Net model for 3D light-sheet image segmentation of zebrafish trunk vessels

Jingyi Yin, Guang Yang, Xiaofei Qin, Hui Li, and Linbo Wang

Biomed. Opt. Express 13(5), 2896-2908 (2022)  View: HTML | PDF  [Suppl. Mat. (3)]

Digital refocusing based on deep learning in optical coherence tomography

Zhuoqun Yuan, Di Yang, Zihan Yang, Jingzhu Zhao, and Yanmei Liang

Biomed. Opt. Express 13(5), 3005-3020 (2022)  View: HTML | PDF

Dual-wavelength multimodal multiphoton microscope with SMA-based depth scanning

Wentao Wu, Qihao Liu, Christoph Brandt, and Shuo Tang

Biomed. Opt. Express 13(5), 2754-2771 (2022)  View: HTML | PDF

Rapid slide-free and non-destructive histological imaging using wide-field optical-sectioning microscopy

Yan Zhang, Lei Kang, Claudia T. K. Lo, Victor T. C. Tsang, and Terence T. W. Wong

Biomed. Opt. Express 13(5), 2782-2796 (2022)  View: HTML | PDF  [Suppl. Mat. (3)]

Photon efficient orientation estimation using polarization modulation in single-molecule localization microscopy

Rasmus Ø. Thorsen, Christiaan N. Hulleman, Bernd Rieger, and Sjoerd Stallinga

Biomed. Opt. Express 13(5), 2835-2858 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Quantitative analysis of illumination and detection corrections in adaptive light sheet fluorescence microscopy

Mani Ratnam Rai, Chen Li, and Alon Greenbaum

Biomed. Opt. Express 13(5), 2960-2974 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Gastric cancer multicellular spheroid analysis by two-photon microscopy

George Alzeeb, Matthieu Dubreuil, Danielle Arzur, Sylvain Rivet, Laurent Corcos, Yann Le Grand, and Catherine Le Jossic-Corcos

Biomed. Opt. Express 13(5), 3120-3130 (2022)  View: HTML | PDF  [Suppl. Mat. (3)]

Combined indocyanine green and quantitative perfusion assessment with hyperspectral imaging during colorectal resections

A. Pfahl, G. K. Radmacher, H. Köhler, M. Maktabi, T. Neumuth, A. Melzer, I. Gockel, C. Chalopin, and B. Jansen-Winkeln

Biomed. Opt. Express 13(5), 3145-3160 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Millimeter waves alter DNA secondary structures and modulate the transcriptome in human fibroblasts

Nicholas B. Lawler, Cameron W. Evans, Sergii Romanenko, Nutan Chaudhari, Mark Fear, Fiona Wood, Nicole M. Smith, Vincent P. Wallace, and K. Swaminathan Iyer

Biomed. Opt. Express 13(5), 3131-3144 (2022)  View: HTML | PDF  [Suppl. Mat. (2)]

In vivo assessment of corneal biomechanics under a localized cross-linking treatment using confocal air-coupled optical coherence elastography

Fernando Zvietcovich, Achuth Nair, Manmohan Singh, Salavat R. Aglyamov, Michael D. Twa, and Kirill V. Larin

Biomed. Opt. Express 13(5), 2644-2654 (2022)  View: HTML | PDF

Automatic evaluation of graft orientation during Descemet membrane endothelial keratoplasty using intraoperative OCT

Marc B. Muijzer, Friso G. Heslinga, Floor Couwenberg, Herke-Jan Noordmans, Abdelkarim Oahalou, Josien P. W. Pluim, Mitko Veta, and Robert P. L. Wisse

Biomed. Opt. Express 13(5), 2683-2694 (2022)  View: HTML | PDF

Compression optical coherence elastography versus strain ultrasound elastography for breast cancer detection and differentiation: pilot study

Ekaterina V. Gubarkova, Aleksander A. Sovetsky, Dmitry A. Vorontsov, Pavel A. Buday, Marina A. Sirotkina, Anton A. Plekhanov, Sergey S. Kuznetsov, Aleksander L. Matveyev, Lev A. Matveev, Sergey V. Gamayunov, Alexey Y. Vorontsov, Vladimir Y. Zaitsev, and Natalia D. Gladkova

Biomed. Opt. Express 13(5), 2859-2880 (2022)  View: HTML | PDF

Computational refocusing of Jones matrix polarization-sensitive optical coherence tomography and investigation of defocus-induced polarization artifacts

Lida Zhu, Shuichi Makita, Daisuke Oida, Arata Miyazawa, Kensuke Oikawa, Pradipta Mukherjee, Antonia Lichtenegger, Martin Distel, and Yoshiaki Yasuno

Biomed. Opt. Express 13(5), 2975-2994 (2022)  View: HTML | PDF

Micron-scale hysteresis measurement using dynamic optical coherence elastography

Wenjie Li, Jinping Feng, Yicheng Wang, Qun Shi, Guoqin Ma, Salavat Aglyamov, Kirill V. Larin, Gongpu Lan, and Michael Twa

Biomed. Opt. Express 13(5), 3021-3041 (2022)  View: HTML | PDF

Discriminating healthy from tumor tissue in breast lumpectomy specimens using deep learning-based hyperspectral imaging

Lynn-Jade S. Jong, Naomi de Kruif, Freija Geldof, Dinusha Veluponnar, Joyce Sanders, Marie-Jeanne T. F. D. Vrancken Peeters, Frederieke van Duijnhoven, Henricus J. C. M. Sterenborg, Behdad Dashtbozorg, and Theo J. M. Ruers

Biomed. Opt. Express 13(5), 2581-2604 (2022)  View: HTML | PDF

Multispectral truncated-correlation photothermal coherence tomography imaging modality for detection of early stage dental caries

Elnaz Baradaran Shokouhi, Robert Welch, Koneswaran Sivagurunathan, and Andreas Mandelis

Biomed. Opt. Express 13(5), 2772-2781 (2022)  View: HTML | PDF

Development of a mobile phone camera-based transcutaneous bilirubinometer for low-resource settings

Brandon Harrison-Smith, Alexander P. Dumont, Mohammed Shahriar Arefin, Yu Sun, Nuradeen Lawal, Dorianna Dobson, Amy Nwaba, Sarah Grossarth, Abdulsalam Muhammed Paed, Zubaida L. Farouk, Jorn-Hendrik Weitkamp, and Chetan A. Patil

Biomed. Opt. Express 13(5), 2797-2809 (2022)  View: HTML | PDF

Machine learning enabled multiple illumination quantitative optoacoustic oximetry imaging in humans

Thomas Kirchner, Michael Jaeger, and Martin Frenz

Biomed. Opt. Express 13(5), 2655-2667 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Photoacoustic characterization of bone physico-chemical information

Weiya Xie, Ting Feng, Dong Yu, Dean Ta, Liming Cheng, and Qian Cheng

Biomed. Opt. Express 13(5), 2668-2681 (2022)  View: HTML | PDF

Terahertz anisotropy in fascia and lean meat tissues

Hongting Xiong, Hongyan Sun, Jiangping Zhou, Haotian Li, Hao Zhang, Shaojie Liu, Jiahua Cai, Lin Feng, Jungang Miao, Sai Chen, and Xiaojun Wu

Biomed. Opt. Express 13(5), 2605-2615 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Tissue-mimicking phantom materials with tunable optical properties suitable for assessment of diffuse reflectance spectroscopy during electrosurgery

Sara Azizian Amiri, Pieter Van Berckel, Marco Lai, Jenny Dankelman, and Benno H. W. Hendriks

Biomed. Opt. Express 13(5), 2616-2643 (2022)  View: HTML | PDF

Separating single- and multiple-scattering components in laser speckle contrast imaging of tissue blood flow

Yifan Zhang, Cheng Wang, Shanbao Tong, and Peng Miao

Biomed. Opt. Express 13(5), 2881-2895 (2022)  View: HTML | PDF

Monte-Carlo simulation and tissue-phantom model for validation of ocular oximetry

Cléophace Akitegetse, Patricia Landry, Jonathan Robidoux, Nicolas Lapointe, Danny Brouard, and Dominic Sauvageau

Biomed. Opt. Express 13(5), 2929-2946 (2022)  View: HTML | PDF  [Suppl. Mat. (1)]

Instrument for fast whole-field peripheral refraction in the human eye

Enrique J. Fernandez, Santiago Sager, Zhenghua Lin, Jiangdong Hao, Javier Roca, Pedro M. Prieto, Zhikuang Yang, Weizhong Lan, and Pablo Artal

Biomed. Opt. Express 13(5), 2947-2959 (2022)  View: HTML | PDF

Visualizing retinal cells with adaptive optics imaging modalities using a translational imaging framework

John P. Giannini, Rongwen Lu, Andrew J. Bower, Robert Fariss, and Johnny Tam

Biomed. Opt. Express 13(5), 3042-3055 (2022)  View: HTML | PDF

Mechanisms of corneal intrastromal laser dissection for refractive surgery: ultra-high-speed photographic investigation at up to 50 million frames per second

Sebastian Freidank, Alfred Vogel, and Norbert Linz

Biomed. Opt. Express 13(5), 3056-3079 (2022)  View: HTML | PDF  [Suppl. Mat. (5)]

In vivo PS-OCT needle probe scan of human skeletal muscle: publisher’s note

Jeffrey M. McBride, Michael J. Hackmann, Sophia Nimphius, and Barry Cense

Biomed. Opt. Express 13(5), 2682-2682 (2022)  View: HTML | PDF