Deep survival modeling of longitudinal retinal OCT volumes for predicting the onset of atrophy in patients with intermediate AMD

Antoine Rivail, Wolf-Dieter Vogl, Sophie Riedl, Christoph Grechenig, Leonard M. Coulibaly, Gregor S. Reiter, Robyn H. Guymer, Zhichao Wu, Ursula Schmidt-Erfurth, and Hrvoje Bogunović

Biomed. Opt. Express 14(6), 2449-2464 (2023)  View: HTML | PDF

MAS-Net OCT: a deep-learning-based speckle-free multiple aperture synthetic optical coherence tomography

Renxiong Wu, Shaoyan Huang, Junming Zhong, Meixuan Li, Fei Zheng, En Bo, Linbo Liu, Yong Liu, Xin Ge, and Guangming Ni

Biomed. Opt. Express 14(6), 2591-2607 (2023)  View: HTML | PDF

Quantitative characterization of zebrafish development based on multiple classifications using Mueller matrix OCT

Ke Li, Bin Liu, Zaifan Wang, Yao Li, Hui Li, Shulian Wu, and Zhifang Li

Biomed. Opt. Express 14(6), 2889-2904 (2023)  View: HTML | PDF

Real-time closed-loop tissue-specific laser osteotomy using deep-learning-assisted optical coherence tomography

Yakub. A. Bayhaqi, Arsham Hamidi, Alexander A. Navarini, Philippe C. Cattin, Ferda Canbaz, and Azhar Zam

Biomed. Opt. Express 14(6), 2986-3002 (2023)  View: HTML | PDF

Compression OCT-elastography combined with speckle-contrast analysis as an approach to the morphological assessment of breast cancer tissue

Anton A. Plekhanov, Ekaterina V. Gubarkova, Marina A. Sirotkina, Alexander A. Sovetsky, Dmitry A. Vorontsov, Lev A. Matveev, Sergey S. Kuznetsov, Alexandra Y. Bogomolova, Alexey Y. Vorontsov, Alexander L. Matveyev, Sergey V. Gamayunov, Elena V. Zagaynova, Vladimir Y. Zaitsev, and Natalia D. Gladkova

Biomed. Opt. Express 14(6), 3037-3056 (2023)  View: HTML | PDF

Central and peripheral refraction measured by a novel double-pass instrument

Dimitrios Christaras, Spyridon Tsoukalas, Petros Papadogiannis, Charlie Börjeson, Moa Volny, Linda Lundström, Pablo Artal, and Harilaos Ginis

Biomed. Opt. Express 14(6), 2608-2617 (2023)  View: HTML | PDF

Complexity of crystalline lens wobbling investigated by means of combined mechanical and optical simulations

Agnieszka Boszczyk, Fabian Dębowy, Agnieszka Jóźwik, Ali Dahaghin, and Damian Siedlecki

Biomed. Opt. Express 14(6), 2465-2477 (2023)  View: HTML | PDF  [Suppl. Mat. (3)]

ON and OFF receptive field processing in the presence of optical scattering

Katharina Breher, Antonia Neumann, Dominik Kurth, Frank Schaeffel, and Siegfried Wahl

Biomed. Opt. Express 14(6), 2618-2628 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Individualized modeling for the peripheral optics of the human myopic eye

Juan Tabernero, Enian Kallamata, Gabriella Velonias, and Fuensanta A. Vera-Diaz

Biomed. Opt. Express 14(6), 2726-2735 (2023)  View: HTML | PDF

Functional visual tests to evaluate the effect of small astigmatism correction with toric contact lenses

Pedro Gil, Alexandra Farcas, Antonio Benito, and Juan Tabernero

Biomed. Opt. Express 14(6), 2811-2820 (2023)  View: HTML | PDF

Laser pulse train parameters determine the brightness of a two-photon stimulus

Marcin J. Marzejon, Łukasz Kornaszewski, Maciej Wojtkowski, and Katarzyna Komar

Biomed. Opt. Express 14(6), 2857-2872 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Matrix optics of artificial intraocular pinhole apertures in astigmatic eyes: modelling depth of field

Tanya Evans

Biomed. Opt. Express 14(6), 3018-3036 (2023)  View: HTML | PDF

Spatial frequency domain imaging for the assessment of scleroderma skin involvement

Anahita Pilvar, Aarohi M. Mehendale, Kavon Karrobi, Fatima El-Adili, Andreea Bujor, and Darren Roblyer

Biomed. Opt. Express 14(6), 2955-2968 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Digital labeling for 3D histology: segmenting blood vessels without a vascular contrast agent using deep learning

Maryse Lapierre-Landry, Yehe Liu, Mahdi Bayat, David L. Wilson, and Michael W. Jenkins

Biomed. Opt. Express 14(6), 2416-2431 (2023)  View: HTML | PDF  [Suppl. Mat. (2)]

Temporal focusing multiphoton microscopy with cross-modality multi-stage 3D U-Net for fast and clear bioimaging

Yvonne Yuling Hu, Chia-Wei Hsu, Yu-Hao Tseng, Chun-Yu Lin, Hsueh-Cheng Chiang, Ann-Shyn Chiang, Shin-Tsu Chang, and Shean-Jen Chen

Biomed. Opt. Express 14(6), 2478-2491 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Automated colonoscopy withdrawal phase duration estimation using cecum detection and surgical tasks classification

Thomas De Carvalho, Rawen Kader, Patrick Brandao, Juana González-Bueno Puyal, Laurence B. Lovat, Peter Mountney, and Danail Stoyanov

Biomed. Opt. Express 14(6), 2629-2644 (2023)  View: HTML | PDF

Spectral focusing-based stimulated Raman scattering microscopy using compact glass blocks for adjustable dispersion

Justin R. Gagnon, Christian Harry Allen, Dominique Trudel, Frederic Leblond, Peter K. Stys, Craig Brideau, and Sangeeta Murugkar

Biomed. Opt. Express 14(6), 2510-2522 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Visualizing drug-induced lipid accumulation in lysosomes of live cancer cells with stimulated Raman imaging

Yuhao Yuan, Emmanuel O. Olawode, L. Nathan Tumey, and Fake Lu

Biomed. Opt. Express 14(6), 2551-2564 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Primary assessment of medicines for expected migrastatic potential with holographic incoherent quantitative phase imaging

Markéta Šuráňová, Miroslav Ďuriš, Irena Štenglová Netíková, Jan Brábek, Tomáš Horák, Veronika Jůzová, Radim Chmelík, and Pavel Veselý

Biomed. Opt. Express 14(6), 2689-2708 (2023)  View: HTML | PDF

Method for nanoparticles uptake evaluation based on double labeled fluorescent cells scanned in enhanced darkfield microscopy

Mona Mihailescu, Luminita C. Miclea, Ana M. Pleava, Nicolae Tarba, Eugen N. Scarlat, Raluca D. Negoita, Mihaela G. Moisescu, and Tudor Savopol

Biomed. Opt. Express 14(6), 2796-2810 (2023)  View: HTML | PDF

Deep learning-based adaptive optics for light sheet fluorescence microscopy

Mani Ratnam Rai, Chen Li, H. Troy Ghashghaei, and Alon Greenbaum

Biomed. Opt. Express 14(6), 2905-2919 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

High-resolution multi-z confocal microscopy with a diffractive optical element

Bingying Zhao, Minoru Koyama, and Jerome Mertz

Biomed. Opt. Express 14(6), 3057-3071 (2023)  View: HTML | PDF  [Suppl. Mat. (6)]

Adaptive window space direction laser speckle contrast imaging to improve vascular visualization

Guang Han, De Li, Jiwei Wang, Qianbei Guo, Jixin Yuan, Ruijuan Chen, Jinhai Wang, Huiquan Wang, and Jun Zhang

Biomed. Opt. Express 14(6), 3086-3099 (2023)  View: HTML | PDF

Characteristics of Henle’s fiber layer in healthy and glaucoma eyes assessed by polarization-sensitive optical coherence tomography

Alice R. Motschi, Florian Schwarzhans, Sylvia Desissaire, Stefan Steiner, Hrvoje Bogunović, Philipp K. Roberts, Clemens Vass, Christoph K. Hitzenberger, and Michael Pircher

Biomed. Opt. Express 14(6), 2709-2725 (2023)  View: HTML | PDF

Optical coherence tomography of human fetal membrane sub-layers during loading

Kayvan Samimi, Emmanuel Contreras Guzman, May Wu, Lindsey Carlson, Helen Feltovich, Timothy J. Hall, Kristin M. Myers, Michelle L. Oyen, and Melissa C. Skala

Biomed. Opt. Express 14(6), 2969-2985 (2023)  View: HTML | PDF  [Suppl. Mat. (3)]

Comparison of whole blood and serum samples of breast cancer based on laser-induced breakdown spectroscopy with machine learning

Bushra Sana Idrees, Geer Teng, Ayesha Israr, Huma Zaib, Yasir Jamil, Muhammad Bilal, Sajid Bashir, M. Nouman Khan, and Qianqian Wang

Biomed. Opt. Express 14(6), 2492-2509 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Designing and simulating realistic spatial frequency domain imaging systems using open-source 3D rendering software

Jane Crowley and George S. D. Gordon

Biomed. Opt. Express 14(6), 2523-2538 (2023)  View: HTML | PDF

Assessment of retinal vein pulsation through video-ophthalmoscopy and simultaneous biosignals acquisition

Radim Kolar, Tomas Vicar, Jiri Chmelik, Roman Jakubicek, Jan Odstrcilik, Eva Valterova, Michal Nohel, Karolina Skorkovska, and Ralf P. Tornow

Biomed. Opt. Express 14(6), 2645-2657 (2023)  View: HTML | PDF

Mueller polarimetric imaging as a tool for detecting the effect of non-thermal plasma treatment on the skin

Hang Yang, Bo Liu, Junha Park, Océane Blaise, Constance Duchesne, Bruno Honnorat, Jérémy Vizet, Antoine Rousseau, and Angelo Pierangelo

Biomed. Opt. Express 14(6), 2736-2755 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Identification of late-life depression and mild cognitive impairment via serum surface-enhanced Raman spectroscopy and multivariate statistical analysis

Denghui Yan, Changchun Xiong, Qingshan Zhong, Yudong Yao, Shuo Chen, Xi Mei, and Shanshan Zhu

Biomed. Opt. Express 14(6), 2920-2933 (2023)  View: HTML | PDF

Vacuum-assisted tissue embedding for whole-heart imaging

Zhi Wang, Ruiheng Xie, Qishuo Shi, Yafeng Li, Jin Chang, Jing Yuan, Hui Gong, and Jianwei Chen

Biomed. Opt. Express 14(6), 2539-2550 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

DIRECT, a low-cost system for high-speed, low-noise imaging of fluorescent bio-samples

Isabell Whiteley, Chenchen Song, Glenn A. Howe, Thomas Knöpfel, and Christopher J. Rowlands

Biomed. Opt. Express 14(6), 2565-2575 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Raman spectromics method for fast and label-free genotype screening

Shanshan Zhu, Yanjian Li, Fengdi Zhang, Changchun Xiong, Han Gao, Yudong Yao, Wei Qian, Chen Ding, and Shuo Chen

Biomed. Opt. Express 14(6), 3072-3085 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Visual inertial odometry enabled 3D ultrasound and photoacoustic imaging

Deeksha M. Sankepalle, Brian Anthony, and Srivalleesha Mallidi

Biomed. Opt. Express 14(6), 2756-2772 (2023)  View: HTML | PDF  [Suppl. Mat. (4)]

Non-invasive diffuse optical monitoring of cerebral physiology in an adult swine-model of impact traumatic brain injury

Rodrigo M. Forti, Lucas J. Hobson, Emilie J. Benson, Tiffany S. Ko, Nicolina R. Ranieri, Gerard Laurent, M. Katie Weeks, Nicholas J. Widmann, Sarah Morton, Anthony M. Davis, Takayuki Sueishi, Yuxi Lin, Karli S. Wulwick, Nicholas Fagan, Samuel S. Shin, Shih-Han Kao, Daniel J. Licht, Brian R. White, Todd J. Kilbaugh, Arjun G. Yodh, and Wesley B. Baker

Biomed. Opt. Express 14(6), 2432-2448 (2023)  View: HTML | PDF

Physics-guided neural network for tissue optical properties estimation

Kian Chee Chong and Manojit Pramanik

Biomed. Opt. Express 14(6), 2576-2590 (2023)  View: HTML | PDF  [Suppl. Mat. (1)]

Measurement of rat and human tissue optical properties for improving the optical detection and visualization of peripheral nerves

Ezekiel J. Haugen, Graham A. Throckmorton, Alec B. Walter, Anita Mahadevan-Jansen, and Justin S. Baba

Biomed. Opt. Express 14(6), 2839-2856 (2023)  View: HTML | PDF  [Suppl. Mat. (3)]

Design for a low-cost heterodyne frequency domain-diffuse optical spectroscopy system

Joseph B. Majeski, Vincent D. Ching-Roa, Michael G. Giacomelli, and Regine Choe

Biomed. Opt. Express 14(6), 2873-2888 (2023)  View: HTML | PDF

CGAN-rIRN: a data-augmented deep learning approach to accurate classification of mental tasks for a fNIRS-based brain-computer interface

Yao Zhang, Dongyuan Liu, Tieni Li, Pengrui Zhang, Zhiyong Li, and Feng Gao

Biomed. Opt. Express 14(6), 2934-2954 (2023)  View: HTML | PDF

On-chip clearing for live imaging of 3D cell cultures

Tingting Yu, Xiang Zhong, Qihang Yang, Chao Gao, Wenyue Chen, Xiang Liu, Zhang Liu, Tingting Zhu, Dongyu Li, Peng Fei, Zaozao Chen, Zhongze Gu, and Dan Zhu

Biomed. Opt. Express 14(6), 3003-3017 (2023)  View: HTML | PDF  [Suppl. Mat. (3)]

Approach to the design of different types of intraocular lenses based on an improved sinusoidal profile

Yuwei Xing, Yongji Liu, Kunqi Li, Xiaolan Li, Dongyu Liu, and Yan Wang

Biomed. Opt. Express 14(6), 2821-2838 (2023)  View: HTML | PDF