Optimization of data acquisition operation in optical tomography based on estimation theory

Mahshad Javidan, Hadi Esfandi, and Ramin Pashaie

Biomed. Opt. Express 12(9), 5670-5690 (2021)  View: HTML | PDF

Machine learning model with physical constraints for diffuse optical tomography

Yun Zou, Yifeng Zeng, Shuying Li, and Quing Zhu

Biomed. Opt. Express 12(9), 5720-5735 (2021)  View: HTML | PDF

Extraction of tissue optical property and blood flow from speckle contrast diffuse correlation tomography (scDCT) measurements

Mingjun Zhao, Chong Huang, Siavash Mazdeyasna, and Guoqiang Yu

Biomed. Opt. Express 12(9), 5894-5908 (2021)  View: HTML | PDF

Low-cost, chromatic confocal endomicroscope for cellular imaging in vivo

Nachiket Kulkarni, Andrew Masciola, Abhinav Nishant, Kyung-Jo Kim, Heejoo Choi, Arthur Gmitro, Esther E. Freeman, Aggrey Semeere, Miriam Nakalembe, and Dongkyun Kang

Biomed. Opt. Express 12(9), 5629-5643 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

Miniaturized optical fiber probe for prostate cancer screening

Antonio Iele, Armando Ricciardi, Claudia Pecorella, Andrea Cirillo, Fanny Ficuciello, Bruno Siciliano, Roberto La Rocca, Vincenzo Mirone, Marco Consales, and Andrea Cusano

Biomed. Opt. Express 12(9), 5691-5703 (2021)  View: HTML | PDF

Wavefront sensor-less adaptive optics using deep reinforcement learning

Eduard Durech, William Newberry, Jonas Franke, and Marinko V. Sarunic

Biomed. Opt. Express 12(9), 5423-5438 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Multimodal microscopy for the simultaneous visualization of five different imaging modalities using a single light source

Jiheun Ryu, Ungyo Kang, Joon Woo Song, Junyoung Kim, Jin Won Kim, Hongki Yoo, and Bomi Gweon

Biomed. Opt. Express 12(9), 5452-5469 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Deriving high contrast fluorescence microscopy images through low contrast noisy image stacks

Sebastian Acuña, Mayank Roy, Luis E. Villegas-Hernández, Vishesh K. Dubey, Balpreet Singh Ahluwalia, and Krishna Agarwal

Biomed. Opt. Express 12(9), 5529-5543 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Fast digital refocusing and depth of field extended Fourier ptychography microscopy

Shaohui Zhang, Guocheng Zhou, Chuanjian Zheng, Tong Li, Yao Hu, and Qun Hao

Biomed. Opt. Express 12(9), 5544-5558 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Artificial intelligence-augmented, label-free molecular imaging method for tissue identification, cancer diagnosis, and cancer margin detection

Jiasong Li, Jun Liu, Ye Wang, Yunjie He, Kai Liu, Raksha Raghunathan, Steven S. Shen, Tiancheng He, Xiaohui Yu, Rebecca Danforth, Feibi Zheng, Hong Zhao, and Stephen T. C. Wong

Biomed. Opt. Express 12(9), 5559-5582 (2021)  View: HTML | PDF

Expansion tomography for large volume tissue imaging with nanoscale resolution

Ruixi Chen, Xiaofeng Cheng, Yongsheng Zhang, Xiong Yang, Yu Wang, Xiuli Liu, and Shaoqun Zeng

Biomed. Opt. Express 12(9), 5614-5628 (2021)  View: HTML | PDF  [Suppl. Mat. (4)]

Low-cost whole slide imaging system with single-shot autofocusing based on color-multiplexed illumination and deep learning

Kaifa Xin, Shaowei Jiang, Xu Chen, Yonghong He, Jian Zhang, Hongpeng Wang, Honghai Liu, Qin Peng, Yongbing Zhang, and Xiangyang Ji

Biomed. Opt. Express 12(9), 5644-5657 (2021)  View: HTML | PDF

DETECTOR: structural information guided artifact detection for super-resolution fluorescence microscopy image

Shan Gao, Fan Xu, Hongjia Li, Fudong Xue, Mingshu Zhang, Pingyong Xu, and Fa Zhang

Biomed. Opt. Express 12(9), 5751-5769 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

High-speed multifocus phase imaging in thick tissue

Sheng Xiao, Shuqi Zheng, and Jerome Mertz

Biomed. Opt. Express 12(9), 5782-5792 (2021)  View: HTML | PDF  [Suppl. Mat. (7)]

Influence of hematoxylin and eosin staining on the quantitative analysis of second harmonic generation imaging of fixed tissue sections

Radu Hristu, Stefan G. Stanciu, Adrian Dumitru, Bogdan Paun, Iustin Floroiu, Mariana Costache, and George A. Stanciu

Biomed. Opt. Express 12(9), 5829-5843 (2021)  View: HTML | PDF

Robust functional imaging of taste sensation with a Bessel beam

Jisoo Han, Seonghoon Kim, Pyonggang Choi, Sungho Lee, Yongjae Jo, Eunsoo Kim, and Myunghwan Choi

Biomed. Opt. Express 12(9), 5855-5864 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Two-photon peak molecular brightness spectra reveal long-wavelength enhancements of multiplexed imaging depth and photostability

Ryan T. Lang and Bryan Q. Spring

Biomed. Opt. Express 12(9), 5909-5919 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Deep-learning-assisted microscopy with ultraviolet surface excitation for rapid slide-free histological imaging

Zhenghui Chen, Wentao Yu, Ivy H. M. Wong, and Terence T. W. Wong

Biomed. Opt. Express 12(9), 5920-5938 (2021)  View: HTML | PDF  [Suppl. Mat. (3)]

Method for controlled tissue theranostics using a single tunable laser source

Rok Podlipec, Jaka Mur, Jaka Petelin, Janez Štrancar, and Rok Petkovšek

Biomed. Opt. Express 12(9), 5881-5893 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Treatment with LEDs at a wavelength of 642 nm enhances skin tumor proliferation in a mouse model

Hyeyoon Goo, SangJoon Mo, Hyeong Ju Park, Min Young Lee, and Jin-Chul Ahn

Biomed. Opt. Express 12(9), 5583-5596 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Three-dimensional localization refinement and motion model parameter estimation for confined single particle tracking under low-light conditions

Ye Lin, Fatemeh Sharifi, and Sean B. Andersson

Biomed. Opt. Express 12(9), 5793-5811 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Optical modulation biosensing system for rapid detection of biological targets at low concentrations

Michael Margulis, Meir Cohen, Shmuel Burg, Shira Avivi-Mintz, and Amos Danielli

Biomed. Opt. Express 12(9), 5338-5350 (2021)  View: HTML | PDF

Student becomes teacher: training faster deep learning lightweight networks for automated identification of optical coherence tomography B-scans of interest using a student-teacher framework

Julia P. Owen, Marian Blazes, Niranchana Manivannan, Gary C. Lee, Sophia Yu, Mary K. Durbin, Aditya Nair, Rishi P. Singh, Katherine E. Talcott, Alline G. Melo, Tyler Greenlee, Eric R. Chen, Thais F. Conti, Cecilia S. Lee, and Aaron Y. Lee

Biomed. Opt. Express 12(9), 5387-5399 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Statistical modeling of retinal optical coherence tomography using the Weibull mixture model

Sahar Jorjandi, Zahra Amini, Gerlind Plonka, and Hossein Rabbani

Biomed. Opt. Express 12(9), 5470-5488 (2021)  View: HTML | PDF

Rapid non-destructive volumetric tumor yield assessment in fresh lung core needle biopsies using polarization sensitive optical coherence tomography

Sreyankar Nandy, Timothy L. Helland, Benjamin W. Roop, Rebecca A. Raphaely, Amy Ly, Madelyn Lew, Sarita R. Berigei, Martin Villiger, Anastasia Sorokina, Margit V. Szabari, Florian J. Fintelmann, Melissa J. Suter, and Lida P. Hariri

Biomed. Opt. Express 12(9), 5597-5613 (2021)  View: HTML | PDF

All-fiber few-mode optical coherence tomography using a modally-specific photonic lantern

Martin Poinsinet de Sivry-Houle, Simon Bolduc Beaudoin, Simon Brais-Brunet, Mathieu Dehaes, Nicolas Godbout, and Caroline Boudoux

Biomed. Opt. Express 12(9), 5704-5719 (2021)  View: HTML | PDF

Ultrawide field, distortion-corrected ocular shape estimation with MHz optical coherence tomography (OCT)

Bingyao Tan, Ryan P. McNabb, Feihui Zheng, Yin CI Sim, Xinwen Yao, Jacqueline Chua, Marcus Ang, Quan V. Hoang, Anthony N. Kuo, and Leopold Schmetterer

Biomed. Opt. Express 12(9), 5770-5781 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

Machine learning-based rapid diagnosis of human borderline ovarian cancer on second-harmonic generation images

Guangxing Wang, Yang Sun, Shuisen Jiang, Guizhu Wu, Wenliang Liao, Yuwei Chen, Zexi Lin, Zhiyi Liu, and Shuangmu Zhuo

Biomed. Opt. Express 12(9), 5658-5669 (2021)  View: HTML | PDF

Machine learning for real-time optical property recovery in interstitial photodynamic therapy: a stimulation-based study

Abdul-Amir Yassine, Lothar Lilge, and Vaughn Betz

Biomed. Opt. Express 12(9), 5401-5422 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Photopolymerization strategy for the preparation of small-diameter artificial blood vessels with micro-nano structures on the inner wall

Yonghao Liu, Jiawei Zhang, Shunxin Li, and Hong Xia

Biomed. Opt. Express 12(9), 5844-5854 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Photoacoustic computed tomography of mechanical HIFU-induced vascular injury

Tri Vu, Yuqi Tang, Mucong Li, Georgii Sankin, Shanshan Tang, Shigao Chen, Pei Zhong, and Junjie Yao

Biomed. Opt. Express 12(9), 5489-5498 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

Moisture adsorption by decellularized bovine pericardium collagen matrices studied by terahertz pulsed spectroscopy and solid immersion microscopy

G. R. Musina, N. V. Chernomyrdin, E. R. Gafarova, A. A. Gavdush, A. J. Shpichka, G. A. Komandin, V. B. Anzin, E. A. Grebenik, M. V. Kravchik, E. V. Istranova, I. N. Dolganova, K. I. Zaytsev, and P. S. Timashev

Biomed. Opt. Express 12(9), 5368-5386 (2021)  View: HTML | PDF

Performance assessment of laser sources for time-domain diffuse correlation spectroscopy

Saeed Samaei, Lorenzo Colombo, Dawid Borycki, Marco Pagliazzi, Turgut Durduran, Piotr Sawosz, Stanislaw Wojtkiewicz, Davide Contini, Alessandro Torricelli, Antonio Pifferi, and Adam Liebert

Biomed. Opt. Express 12(9), 5351-5367 (2021)  View: HTML | PDF

Random laser as a potential tool for the determination of the scattering coefficient

Martin Hohmann, Moritz Späth, Dongqin Ni, Dominique Dörner, Benjamin Lengenfelder, Florian Klämpfl, and Michael Schmidt

Biomed. Opt. Express 12(9), 5439-5451 (2021)  View: HTML | PDF

Dec-DISCO: decolorization DISCO clearing for seeing through the biological architectures of heme-rich organs

Jingtan Zhu, Yilin Ma, Jianyi Xu, Yusha Li, Peng Wan, Yisong Qi, Tingting Yu, and Dan Zhu

Biomed. Opt. Express 12(9), 5499-5513 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Unveiling osteosarcoma responses to DAPT combined with cisplatin by using confocal Raman microscopy

Jie Li, Jing Li, Haifeng Wang, Jie Qin, Haishan Zeng, Kaige Wang, and Shuang Wang

Biomed. Opt. Express 12(9), 5514-5528 (2021)  View: HTML | PDF  [Suppl. Mat. (1)]

Reflective mirror-based line-scan adaptive optics OCT for imaging retinal structure and function

Vimal Prabhu Pandiyan, Xiaoyun Jiang, James A. Kuchenbecker, and Ramkumar Sabesan

Biomed. Opt. Express 12(9), 5865-5880 (2021)  View: HTML | PDF  [Suppl. Mat. (2)]

Label-free imaging of fibroblast membrane interfaces and protein signatures with vibrational infrared photothermal and phase signals: publisher’s note

Panagis D. Samolis, Daniel Langley, Breanna M. O’Reilly, Zay Oo, Geva Hilzenrat, Shyamsunder Erramilli, Allyson E. Sgro, Sally McArthur, and Michelle Y. Sander

Biomed. Opt. Express 12(9), 5400-5400 (2021)  View: HTML | PDF